Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 625 a.a., peptide transport system ATP-binding ABC transporter protein from Sinorhizobium meliloti 1021

 Score =  454 bits (1169), Expect = e-132
 Identities = 249/562 (44%), Positives = 356/562 (63%), Gaps = 15/562 (2%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           +L V NL   + +     + V+ ++ DI   E V VVGESG+GKS    +++ L SP GT
Sbjct: 27  VLSVSNLMCSFRADGLWSSVVQGVSFDIGARETVAVVGESGSGKSVTALSIMRLNSPRGT 86

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122
              G V L G+++  LS   MR++RG+ I  IFQ+PMTSLNP+ T+  Q+ E++  +  +
Sbjct: 87  KIEGSVKLGGKELLSLSDAEMRQIRGNDIAMIFQEPMTSLNPVLTIGFQIAESLILHRGL 146

Query: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182
           S  +A    + L+++V IP  ++R  +YPH+FSGGMRQRV+IA+ALA +P L+IADEPTT
Sbjct: 147 SRAQAENETIRLLEKVRIPAAKSRFHEYPHRFSGGMRQRVMIAMALACKPKLLIADEPTT 206

Query: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242
           ALDV+IQ QIL LI+EL +++ +  + +THDMGVV+ + DR  VMY+G  VE   T  + 
Sbjct: 207 ALDVTIQAQILELIKELQQEDGMSVLFITHDMGVVAEIADRTVVMYKGQAVETASTDDIF 266

Query: 243 GTPEHPYTRSLISAVPR-----SDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRK 297
             P HPYTRSL+SAVP+        +  RFP+V       ++ P++V           + 
Sbjct: 267 NRPNHPYTRSLLSAVPKLGSMAGRSRPMRFPVVDRSTGEADV-PVEV-------PDTVKV 318

Query: 298 YTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIAR 357
              P+L+V  +  RF  K  LF + +  V A  NVSF++  GET  LVGESG GKST  R
Sbjct: 319 SERPVLEVAGLTKRFEVKSGLFSTVKGCVHAVENVSFSIKAGETLALVGESGCGKSTTGR 378

Query: 358 VIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417
            +  L +P+ G V  +G+D+  L S++E R  R  MQM+FQ+PY S+NPRM I   IAEP
Sbjct: 379 SVMRLVEPSGGLVLLDGVDVLKL-SQNELRHQRNHMQMIFQDPYASLNPRMNIGTAIAEP 437

Query: 418 IRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLI 477
           +  +     +SE    V +LL+ VGL      ++PHEFSGGQRQRI IARALA  P+L++
Sbjct: 438 LLING-KGGQSEVADKVAELLQKVGLSPDMAKRFPHEFSGGQRQRICIARALALEPKLIV 496

Query: 478 CDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVA 537
            DE  SALDVSV++Q++NL+ DLQ  + L  LFISHD+ V+ ++  RV VM +G ++E  
Sbjct: 497 ADEAVSALDVSVKSQVVNLMLDLQARMGLAYLFISHDMAVVERVSHRVAVMYLGEIVEAG 556

Query: 538 PTEQLFTDPQHEYSKKLISLMP 559
             E +F +PQH Y+++L+S +P
Sbjct: 557 SREAIFQNPQHPYTRRLLSAVP 578



 Score =  188 bits (477), Expect = 6e-52
 Identities = 113/290 (38%), Positives = 170/290 (58%), Gaps = 17/290 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVK-------SLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           +LEV  L   +  + G+ + VK       +++  I+ GE + +VGESG GKST G +V+ 
Sbjct: 323 VLEVAGLTKRFEVKSGLFSTVKGCVHAVENVSFSIKAGETLALVGESGCGKSTTGRSVMR 382

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L+ P    +GG V L+G  +  LS   +R  R + +  IFQDP  SLNP   +   + E 
Sbjct: 383 LVEP----SGGLVLLDGVDVLKLSQNELRHQR-NHMQMIFQDPYASLNPRMNIGTAIAEP 437

Query: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175
           +  N +    E   +   L+++VG+    +  K++PH+FSGG RQR+ IA ALA EP LI
Sbjct: 438 LLINGKGGQSEVADKVAELLQKVGLSP--DMAKRFPHEFSGGQRQRICIARALALEPKLI 495

Query: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235
           +ADE  +ALDVS++ Q++NL+ +L  +  +  + ++HDM VV  V+ RVAVMY G++VE 
Sbjct: 496 VADEAVSALDVSVKSQVVNLMLDLQARMGLAYLFISHDMAVVERVSHRVAVMYLGEIVEA 555

Query: 236 GPTAKVLGTPEHPYTRSLISAVPRSD--RKLDRFPLVSYIEEAKELKPLD 283
           G    +   P+HPYTR L+SAVP +D  R+L +   VS  E     +P D
Sbjct: 556 GSREAIFQNPQHPYTRRLLSAVPIADPARRLQK-RTVSNDEIKSPFRPAD 604



 Score =  180 bits (457), Expect = 1e-49
 Identities = 112/267 (41%), Positives = 156/267 (58%), Gaps = 16/267 (5%)

Query: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
           P+L V N+   F   D L+ S          VSF +   ET  +VGESGSGKS  A  I 
Sbjct: 26  PVLSVSNLMCSF-RADGLWSS------VVQGVSFDIGARETVAVVGESGSGKSVTALSIM 78

Query: 361 GLYQPNA----GRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAE 416
            L  P      G V   G +L +L     R+     + M+FQ P TS+NP + I   IAE
Sbjct: 79  RLNSPRGTKIEGSVKLGGKELLSLSDAEMRQIRGNDIAMIFQEPMTSLNPVLTIGFQIAE 138

Query: 417 PIRFHK-LTRSESETRQIVNDLLEHVGL--GKMAGLKYPHEFSGGQRQRISIARALATRP 473
            +  H+ L+R+++E   I   LLE V +   K    +YPH FSGG RQR+ IA ALA +P
Sbjct: 139 SLILHRGLSRAQAENETI--RLLEKVRIPAAKSRFHEYPHRFSGGMRQRVMIAMALACKP 196

Query: 474 RLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTL 533
           +LLI DEPT+ALDV++QAQIL L+K+LQ E  +++LFI+HD+ V+ ++ DR  VM  G  
Sbjct: 197 KLLIADEPTTALDVTIQAQILELIKELQQEDGMSVLFITHDMGVVAEIADRTVVMYKGQA 256

Query: 534 LEVAPTEQLFTDPQHEYSKKLISLMPE 560
           +E A T+ +F  P H Y++ L+S +P+
Sbjct: 257 VETASTDDIFNRPNHPYTRSLLSAVPK 283