Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., ABC transporter for D-Raffinose, ATPase component (from data) from Sinorhizobium meliloti 1021

 Score =  404 bits (1039), Expect = e-117
 Identities = 229/555 (41%), Positives = 331/555 (59%), Gaps = 33/555 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           +++ + + + +   +G   AVK ++  + RGE V +VGESG+GKS     V+ LLS   T
Sbjct: 25  VIDARKVAVSFKVENGTVQAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRAT 84

Query: 63  IAG-GEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
           IA    +  +G  +   S +  R +RG +I  IFQ+PM+SLNP++T+  Q+ E I A+ +
Sbjct: 85  IAPQARIEYDGRDVLKFSKRERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHRR 144

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
           VS   A +RAL L++ V IP PE RL QYPHQ SGG RQRV+IA+ALA +PD++IADEPT
Sbjct: 145 VSRRAAAERALELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEPT 204

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           TALDV++Q QILNLIR+L ++  +  +L+THD+ VV   +D V VM  G++ E   T  +
Sbjct: 205 TALDVTVQAQILNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEAL 264

Query: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301
              P+H YTR L+S+ P         PL           P D                  
Sbjct: 265 FADPQHAYTRRLLSSEPSGSAN----PL-----------PDDAPI--------------- 294

Query: 302 LLKVENVNLRF-VTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
           LL   NV + F + K   F    + + A + +S  +   ET GLVGESGSGK+T  + + 
Sbjct: 295 LLDGRNVRVSFTLKKGGFFRPEFKELVAVDGLSLNLRRHETLGLVGESGSGKTTFGQALI 354

Query: 361 GLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRF 420
            L   + G + FEG  +   K     RPLR ++Q+VFQ+P++S+NPRM +  II E +  
Sbjct: 355 RLLNTDGGEIYFEGEPIHD-KDRKGMRPLRSKIQIVFQDPFSSLNPRMSVGQIIEEGLIV 413

Query: 421 HKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDE 480
           + +  +  +  + V D L   G+      ++PHEFSGGQRQRI+IARA+A  P  ++ DE
Sbjct: 414 NGMGENRKDRLKRVEDALVSAGMPSNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDE 473

Query: 481 PTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTE 540
           PTSALD+SVQAQI+ LL+ LQDE  L+ L ISHDL V+R +C RV VMQ G ++E  P  
Sbjct: 474 PTSALDLSVQAQIIELLRRLQDERGLSYLVISHDLKVVRALCHRVVVMQDGKIVEEGPVS 533

Query: 541 QLFTDPQHEYSKKLI 555
           ++  +P+  Y+++L+
Sbjct: 534 EVLNNPKTAYTERLV 548



 Score =  196 bits (498), Expect = 2e-54
 Identities = 114/249 (45%), Positives = 155/249 (62%), Gaps = 10/249 (4%)

Query: 319 FESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNA-----GRVTFE 373
           F+     VQA  +VSF ++ GET  +VGESGSGKS  AR + GL    A      R+ ++
Sbjct: 35  FKVENGTVQAVKDVSFQLYRGETVAIVGESGSGKSVTARTVMGLLSKRATIAPQARIEYD 94

Query: 374 GIDLTALKSEHERRPLRR-QMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQ 432
           G D+    S+ ERR LR  ++ M+FQ P +S+NP   I   I E IR H+     +   +
Sbjct: 95  GRDVLKF-SKRERRALRGDRISMIFQEPMSSLNPVYTIGSQIIEAIRAHRRVSRRAAAER 153

Query: 433 IVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQ 490
            + +LL HV +        +YPH+ SGGQRQR+ IA ALA  P +LI DEPT+ALDV+VQ
Sbjct: 154 AL-ELLRHVQIPDPEARLNQYPHQLSGGQRQRVMIAMALANDPDVLIADEPTTALDVTVQ 212

Query: 491 AQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEY 550
           AQILNL++ LQ EL + ++ I+HDL V+RQ  D V VMQ+G + E   TE LF DPQH Y
Sbjct: 213 AQILNLIRKLQQELGMAVILITHDLTVVRQFSDYVYVMQLGEVKEHNTTEALFADPQHAY 272

Query: 551 SKKLISLMP 559
           +++L+S  P
Sbjct: 273 TRRLLSSEP 281



 Score =  181 bits (460), Expect = 5e-50
 Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 16/263 (6%)

Query: 3   LLEVKNLRIEYPSRHGVH--------AAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVI 54
           LL+ +N+R+ +  + G           AV  L+L+++R E +G+VGESG+GK+T G A+I
Sbjct: 295 LLDGRNVRVSFTLKKGGFFRPEFKELVAVDGLSLNLRRHETLGLVGESGSGKTTFGQALI 354

Query: 55  DLLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTE 114
            LL+  G    GE+Y  GE I     + MR +R SKI  +FQDP +SLNP  +V   + E
Sbjct: 355 RLLNTDG----GEIYFEGEPIHDKDRKGMRPLR-SKIQIVFQDPFSSLNPRMSVGQIIEE 409

Query: 115 TIHAN-MQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPD 173
            +  N M  + ++  +R    +   G+P   N L ++PH+FSGG RQR+ IA A+A EP+
Sbjct: 410 GLIVNGMGENRKDRLKRVEDALVSAGMPS--NILSRFPHEFSGGQRQRIAIARAVALEPE 467

Query: 174 LIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLV 233
            I+ DEPT+ALD+S+Q QI+ L+R L  +  +  ++++HD+ VV  +  RV VM  G +V
Sbjct: 468 FILLDEPTSALDLSVQAQIIELLRRLQDERGLSYLVISHDLKVVRALCHRVVVMQDGKIV 527

Query: 234 EFGPTAKVLGTPEHPYTRSLISA 256
           E GP ++VL  P+  YT  L+ A
Sbjct: 528 EEGPVSEVLNNPKTAYTERLVKA 550