Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  431 bits (1108), Expect = e-125
 Identities = 242/559 (43%), Positives = 354/559 (63%), Gaps = 43/559 (7%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
           S+L V+ L++++ +  G   AVK + LD++ GE + VVGESG+GKS     ++ LL+  G
Sbjct: 7   SILAVRGLKVDFYTPDGTVEAVKGIDLDVRSGETLAVVGESGSGKSQTMMGIMGLLAKNG 66

Query: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
           T+ G   Y  G+++ GL+P+A+ +VRGSKI  IFQ+PMTSL+PL+T+  Q+ E I  +  
Sbjct: 67  TVTGSARY-RGQELVGLAPKALNKVRGSKITMIFQEPMTSLDPLYTIGRQIAEPIVHHRG 125

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
            S +EA +R L L++ VGIP+P  R+  YPH+ SGG RQRV+IA+ALA EPD++IADEPT
Sbjct: 126 GSFKEARRRVLELLELVGIPEPGRRIDSYPHELSGGQRQRVMIAMALANEPDILIADEPT 185

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           TALDV+IQ QIL+L++ L ++  +  +L+THD+G+V    DRVAVM RG++VE G TA +
Sbjct: 186 TALDVTIQAQILDLLKSLQRRFGMAIVLITHDLGIVKYFADRVAVMRRGEVVEQGMTADI 245

Query: 242 LGTPEHPYTRSLISAVPRSDRKL---DRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKY 298
              P+  YTR L+ A P S RK    D  P++                            
Sbjct: 246 FERPKGDYTRMLLEAEP-SGRKASPPDNAPII---------------------------- 276

Query: 299 TGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARV 358
               L+  NV + +     LF       +A + V+  + +G+T G+VGESGSGKST+ R 
Sbjct: 277 ----LEGRNVAVDYTIPGGLFRGASAAFRAVDGVNLRLRQGQTIGIVGESGSGKSTLGRA 332

Query: 359 IAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPI 418
           +  L  P++G   F   D++        RPLRRQ+Q+VFQ+PY S++PR  + +II E +
Sbjct: 333 LLRLL-PSSGYYRFGSTDISGF-DRGAMRPLRRQLQLVFQDPYGSLSPRRTVGEIITEGL 390

Query: 419 RFHK--LTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLL 476
             H+  L+R++ + R I    L+ VGL   +  +YPHEFSGGQRQRI+IARA+  +P+++
Sbjct: 391 HVHEPDLSRADRDRRAIA--ALKEVGLDPASRNRYPHEFSGGQRQRIAIARAIILKPKVV 448

Query: 477 ICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEV 536
           I DEPTSALD SVQ Q++ LL+DLQ++  L+ +FISHDL V++ M D V VM+ G ++E 
Sbjct: 449 ILDEPTSALDRSVQGQVIELLRDLQEKHGLSYIFISHDLSVVKAMSDYVIVMKNGRIVEE 508

Query: 537 APTEQLFTDPQHEYSKKLI 555
             T+ +F  P+  Y+K LI
Sbjct: 509 GETDAIFDAPREPYTKTLI 527



 Score =  175 bits (444), Expect = 4e-48
 Identities = 102/263 (38%), Positives = 160/263 (60%), Gaps = 18/263 (6%)

Query: 3   LLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           +LE +N+ ++Y    G+         AV  + L +++G+ +G+VGESG+GKST+G A++ 
Sbjct: 276 ILEGRNVAVDYTIPGGLFRGASAAFRAVDGVNLRLRQGQTIGIVGESGSGKSTLGRALLR 335

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           LL   G    G        ISG    AMR +R  ++  +FQDP  SL+P  TV   +TE 
Sbjct: 336 LLPSSGYYRFGST-----DISGFDRGAMRPLR-RQLQLVFQDPYGSLSPRRTVGEIITEG 389

Query: 116 IHANM-QVSAEEAYQRALSLMKQVGI-PQPENRLKQYPHQFSGGMRQRVVIAIALAGEPD 173
           +H +   +S  +  +RA++ +K+VG+ P   NR   YPH+FSGG RQR+ IA A+  +P 
Sbjct: 390 LHVHEPDLSRADRDRRAIAALKEVGLDPASRNR---YPHEFSGGQRQRIAIARAIILKPK 446

Query: 174 LIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLV 233
           ++I DEPT+ALD S+Q Q++ L+R+L +K+ +  + ++HD+ VV  ++D V VM  G +V
Sbjct: 447 VVILDEPTSALDRSVQGQVIELLRDLQEKHGLSYIFISHDLSVVKAMSDYVIVMKNGRIV 506

Query: 234 EFGPTAKVLGTPEHPYTRSLISA 256
           E G T  +   P  PYT++LI A
Sbjct: 507 EEGETDAIFDAPREPYTKTLIGA 529



 Score =  172 bits (436), Expect = 3e-47
 Identities = 105/263 (39%), Positives = 147/263 (55%), Gaps = 13/263 (4%)

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           +L V  + + F T D         V+A   +   V  GET  +VGESGSGKS     I G
Sbjct: 8   ILAVRGLKVDFYTPDGT-------VEAVKGIDLDVRSGETLAVVGESGSGKSQTMMGIMG 60

Query: 362 LYQPNA---GRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPI 418
           L   N    G   + G +L  L  +   +    ++ M+FQ P TS++P   I   IAEPI
Sbjct: 61  LLAKNGTVTGSARYRGQELVGLAPKALNKVRGSKITMIFQEPMTSLDPLYTIGRQIAEPI 120

Query: 419 RFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALATRPRLL 476
             H+   S  E R+ V +LLE VG+ +       YPHE SGGQRQR+ IA ALA  P +L
Sbjct: 121 VHHR-GGSFKEARRRVLELLELVGIPEPGRRIDSYPHELSGGQRQRVMIAMALANEPDIL 179

Query: 477 ICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEV 536
           I DEPT+ALDV++QAQIL+LLK LQ    + ++ I+HDL +++   DRV VM+ G ++E 
Sbjct: 180 IADEPTTALDVTIQAQILDLLKSLQRRFGMAIVLITHDLGIVKYFADRVAVMRRGEVVEQ 239

Query: 537 APTEQLFTDPQHEYSKKLISLMP 559
             T  +F  P+ +Y++ L+   P
Sbjct: 240 GMTADIFERPKGDYTRMLLEAEP 262