Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., oligopeptidemurein peptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  407 bits (1047), Expect = e-118
 Identities = 234/560 (41%), Positives = 339/560 (60%), Gaps = 18/560 (3%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           LL V+NL + + S       +  ++ ++ RGEI+G++GESGAGKSTVGNA++ LLSP   
Sbjct: 10  LLRVENLGLRHVSGSATTPILSDVSFELGRGEILGIIGESGAGKSTVGNAILGLLSPEFQ 69

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHA-NMQ 121
              G +  +G+ I G++      +RG +I  IFQD   SL+PL +V  Q+ ET  A +  
Sbjct: 70  QTSGTIEFDGKAIDGMTADERETLRGRRISAIFQDHTASLDPLMSVGAQVEETCLALDSS 129

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
           +S  EA  RA+ L+ +VGIP+PE R + YPHQFSGG RQRVVIAIALAG PD+IIADEPT
Sbjct: 130 LSRREARARAIDLLARVGIPEPERRYRNYPHQFSGGQRQRVVIAIALAGSPDIIIADEPT 189

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           +ALD ++Q Q+L L++ L  +  V  +LVTHDMGV+S +T+RV VM +G +VE   T  +
Sbjct: 190 SALDATVQKQVLELLKILVDETGVSIILVTHDMGVISEITNRVLVMRKGQVVEADRTTAI 249

Query: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301
           L  P H YT+ L++AVPR      R P  +   E    +     S  +   Q+      P
Sbjct: 250 LDQPRHDYTKKLLAAVPRL-----RIPTRTAKAEDNGRQ---ADSPAIDSDQN------P 295

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQAS-NNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
           LL  E ++ +F  +   +   R   +    +V   +  G   G+VGESGSGK+T  R++A
Sbjct: 296 LLIAEGLSKQFAPQGFAWGIGRGKPRFGLRDVGIRLARGSITGIVGESGSGKTTFGRILA 355

Query: 361 GLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRF 420
           GL     GR+T  G     +     R  L  ++QM+FQ+P  S+NPRM I + + E IRF
Sbjct: 356 GLDTAPTGRITI-GEHPFDVSQSGRRSGLLGRVQMIFQDPSVSLNPRMTIGETLDESIRF 414

Query: 421 HKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDE 480
               RS  E   +   +++ +GL +    ++PH+ SGGQ+QR+ IARAL  RP +++ DE
Sbjct: 415 GARIRSGEEPADLAA-MMDRLGLPRSLLGRHPHQLSGGQKQRVCIARALLARPEIIVADE 473

Query: 481 PTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTE 540
           PTSALDVSVQA+I+ LLKD   E  +TM+FISHDL +++ MC  V + + G + +  PTE
Sbjct: 474 PTSALDVSVQAEIVQLLKDTIAERAMTMVFISHDLAIVQAMCSSVYIFKDGRIEDFGPTE 533

Query: 541 QLFTDPQHEYSKKLISLMPE 560
            +F+   + Y++ LI+  P+
Sbjct: 534 FIFSRSDNPYTRALINARPQ 553



 Score =  176 bits (446), Expect = 2e-48
 Identities = 104/268 (38%), Positives = 160/268 (59%), Gaps = 15/268 (5%)

Query: 299 TGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARV 358
           T PLL+VEN+ LR V+  +            ++VSF +  GE  G++GESG+GKST+   
Sbjct: 7   TTPLLRVENLGLRHVSGSAT-------TPILSDVSFELGRGEILGIIGESGAGKSTVGNA 59

Query: 359 IAGL----YQPNAGRVTFEGIDLTALKSEHERRPLR-RQMQMVFQNPYTSMNPRMKIFDI 413
           I GL    +Q  +G + F+G  +  + ++ ER  LR R++  +FQ+   S++P M +   
Sbjct: 60  ILGLLSPEFQQTSGTIEFDGKAIDGMTAD-ERETLRGRRISAIFQDHTASLDPLMSVGAQ 118

Query: 414 IAEPIRFHKLTRSESETRQIVNDLLEHVGL--GKMAGLKYPHEFSGGQRQRISIARALAT 471
           + E       + S  E R    DLL  VG+   +     YPH+FSGGQRQR+ IA ALA 
Sbjct: 119 VEETCLALDSSLSRREARARAIDLLARVGIPEPERRYRNYPHQFSGGQRQRVVIAIALAG 178

Query: 472 RPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMG 531
            P ++I DEPTSALD +VQ Q+L LLK L DE  ++++ ++HD+ VI ++ +RV VM+ G
Sbjct: 179 SPDIIIADEPTSALDATVQKQVLELLKILVDETGVSIILVTHDMGVISEITNRVLVMRKG 238

Query: 532 TLLEVAPTEQLFTDPQHEYSKKLISLMP 559
            ++E   T  +   P+H+Y+KKL++ +P
Sbjct: 239 QVVEADRTTAILDQPRHDYTKKLLAAVP 266