Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., oligopeptide ABC transporter ATP-binding protein from Sinorhizobium meliloti 1021

 Score =  436 bits (1121), Expect = e-126
 Identities = 235/561 (41%), Positives = 356/561 (63%), Gaps = 45/561 (8%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLS-PPG 61
           LLEV+NL +E+ +  GV  AVKS++  + +GE + ++GESG+GKS   +A+++L+  PPG
Sbjct: 5   LLEVRNLSVEFHTAAGVVHAVKSISYHLDKGETLAILGESGSGKSVSSSAIMNLIDMPPG 64

Query: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
            I+ GE+ L+G  +  +  +  REV G ++  IFQDP++ LNP+++V  Q++E +  +  
Sbjct: 65  RISSGEILLDGRDLLTMPAEERREVNGRRVAMIFQDPLSHLNPVYSVGWQISEAMTTH-G 123

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
           ++  +A + AL L+++VGIP+PE  +++YPH+FSGG RQRV+IA+ALA  PDL+IADEPT
Sbjct: 124 LAGSKAREEALRLLRRVGIPEPERAMRKYPHEFSGGQRQRVMIAMALALRPDLLIADEPT 183

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           TALDV++Q ++L L++EL ++  +  +++THD+GVVS + DRV VM +G +VE G   ++
Sbjct: 184 TALDVTVQAEVLKLLKELQRETGMAVLIITHDLGVVSEIADRVVVMEKGAIVEAGTVREI 243

Query: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301
              P+HPYT+ LI+A P                               G   +      P
Sbjct: 244 YKNPQHPYTQKLIAAAPGK-----------------------------GAMHEPGARAEP 274

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           LL V +V   + + ++L             +SF +  GET  +VGESGSGKST+AR +  
Sbjct: 275 LLSVRDVRKTYGSFEAL-----------KGISFDLMPGETMAVVGESGSGKSTLARALLR 323

Query: 362 LYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH 421
           L +P++G   ++G DL AL S  E   LRR +QMVFQ+P  S+NPRM ++ +I+E    H
Sbjct: 324 LDEPDSGTALWKGRDLFAL-SPAELYKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIH 382

Query: 422 KLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEP 481
                +++ R+ V +LL  VGL      +YPH+FSGGQRQRI+IARALA  P+L+ICDE 
Sbjct: 383 PDILPKAKWRERVAELLVQVGLSAEHMSRYPHQFSGGQRQRIAIARALALEPQLIICDEA 442

Query: 482 TSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQ 541
            SALDVSVQAQ++ LL  L+ E+ +  +FI+HDLPV+R   D V VMQ G ++E+    +
Sbjct: 443 VSALDVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVRE 502

Query: 542 LFTDPQHEYSKKLI--SLMPE 560
           +F  P+  Y++ L+  SL P+
Sbjct: 503 VFDTPRQAYTRALLAASLSPD 523



 Score =  169 bits (428), Expect = 3e-46
 Identities = 106/279 (37%), Positives = 156/279 (55%), Gaps = 14/279 (5%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           LL V+++R  Y    G   A+K ++ D+  GE + VVGESG+GKST+  A++ L  P   
Sbjct: 275 LLSVRDVRKTY----GSFEALKGISFDLMPGETMAVVGESGSGKSTLARALLRLDEPDS- 329

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET--IHANM 120
              G     G  +  LSP  + ++R   +  +FQDP  SLNP  TV   ++E   IH ++
Sbjct: 330 ---GTALWKGRDLFALSPAELYKLRRD-LQMVFQDPTQSLNPRMTVYQLISEAWVIHPDI 385

Query: 121 QVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEP 180
              A+   +R   L+ QVG+      + +YPHQFSGG RQR+ IA ALA EP LII DE 
Sbjct: 386 LPKAKWR-ERVAELLVQVGLSA--EHMSRYPHQFSGGQRQRIAIARALALEPQLIICDEA 442

Query: 181 TTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAK 240
            +ALDVS+Q Q++ L+  L ++  +  + + HD+ VV +  D V VM +G++VE G   +
Sbjct: 443 VSALDVSVQAQVIELLDRLRREMGIAFIFIAHDLPVVRDFADYVMVMQQGEVVELGTVRE 502

Query: 241 VLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKEL 279
           V  TP   YTR+L++A    D       L S   EA ++
Sbjct: 503 VFDTPRQAYTRALLAASLSPDPDAKAGHLASVPAEAADI 541