Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 553 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  411 bits (1057), Expect = e-119
 Identities = 229/557 (41%), Positives = 342/557 (61%), Gaps = 38/557 (6%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLS-PPG 61
           LL V+NL++ + +      AV+ ++  I +GE + +VGESG+GKS    ++  LL  PP 
Sbjct: 17  LLSVENLQVRFGAGPEAVDAVRGVSFTIAKGETLALVGESGSGKSVTALSITRLLPYPPA 76

Query: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTE--TIHAN 119
           +  GG ++ + E +       +R+VRG++I  IFQ+PMTSLNPL ++E Q+ E  T+H  
Sbjct: 77  SHPGGAIFFDSEDLLHAPGARLRDVRGNRISMIFQEPMTSLNPLHSIERQVGEVLTLHKG 136

Query: 120 MQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADE 179
           +   A  A  R + L++ VG+PQ E RL   PH+ SGG RQRV+IA+ALA EPDL+IADE
Sbjct: 137 LHGKARRA--RVIDLLRLVGLPQVEGRLGALPHELSGGQRQRVMIAMALANEPDLLIADE 194

Query: 180 PTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTA 239
           PTTALDV+IQ QIL L+ +L K+  +  + +THD+ +V  V DRVAVM  G +VE G TA
Sbjct: 195 PTTALDVTIQAQILALLADLQKRFGMAILFITHDLSIVRRVADRVAVMKDGLIVETGTTA 254

Query: 240 KVLGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYT 299
            +   P HPYT++L+++ PR   +L        +  A E                     
Sbjct: 255 ALFAAPSHPYTKALLASEPRGTPRL--------VPNAPE--------------------- 285

Query: 300 GPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVI 359
             +L  +++ + F  +  +      +++A + +SF++  GET G+VGESGSGK+T+   +
Sbjct: 286 --ILSCDDLKVWFPIRKGVIRRTVGHIKAVDGISFSLKAGETLGVVGESGSGKTTLGLGL 343

Query: 360 AGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIR 419
             L   + G + F G  L  L S    RPLRR++Q+VFQ+PY S++PR+ + +II E + 
Sbjct: 344 LRLVS-SQGAIVFSGTRLDGL-SNTAMRPLRRRLQIVFQDPYGSLSPRLSVGEIIGEGLA 401

Query: 420 FHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICD 479
            H L    +  R +V   L  VGL      +YPHEFSGGQRQRI+IARAL  +P +++ D
Sbjct: 402 VHGLAGDRAGRRALVTQALSEVGLDPATQDRYPHEFSGGQRQRIAIARALVLKPEVIVLD 461

Query: 480 EPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPT 539
           EPTSALDV+VQAQI++LL+D+Q    +  +FISHDL V+R +  +V VM+ G ++E    
Sbjct: 462 EPTSALDVTVQAQIVDLLRDIQTRHAIAYVFISHDLRVVRALAAQVLVMKDGKVVEAGSG 521

Query: 540 EQLFTDPQHEYSKKLIS 556
           EQ+F  P+H+Y++ L++
Sbjct: 522 EQIFQAPRHDYTRALLA 538



 Score =  191 bits (486), Expect = 5e-53
 Identities = 117/269 (43%), Positives = 155/269 (57%), Gaps = 15/269 (5%)

Query: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
           PLL VEN+ +RF        +  E V A   VSF + +GET  LVGESGSGKS  A  I 
Sbjct: 16  PLLSVENLQVRF-------GAGPEAVDAVRGVSFTIAKGETLALVGESGSGKSVTALSIT 68

Query: 361 GL--YQPNA---GRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIA 415
            L  Y P +   G + F+  DL        R     ++ M+FQ P TS+NP   I   + 
Sbjct: 69  RLLPYPPASHPGGAIFFDSEDLLHAPGARLRDVRGNRISMIFQEPMTSLNPLHSIERQVG 128

Query: 416 EPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALATRP 473
           E +  HK    ++   +++ DLL  VGL ++ G     PHE SGGQRQR+ IA ALA  P
Sbjct: 129 EVLTLHKGLHGKARRARVI-DLLRLVGLPQVEGRLGALPHELSGGQRQRVMIAMALANEP 187

Query: 474 RLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTL 533
            LLI DEPT+ALDV++QAQIL LL DLQ    + +LFI+HDL ++R++ DRV VM+ G +
Sbjct: 188 DLLIADEPTTALDVTIQAQILALLADLQKRFGMAILFITHDLSIVRRVADRVAVMKDGLI 247

Query: 534 LEVAPTEQLFTDPQHEYSKKLISLMPEFT 562
           +E   T  LF  P H Y+K L++  P  T
Sbjct: 248 VETGTTAALFAAPSHPYTKALLASEPRGT 276



 Score =  163 bits (413), Expect = 1e-44
 Identities = 97/264 (36%), Positives = 163/264 (61%), Gaps = 20/264 (7%)

Query: 3   LLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           +L   +L++ +P R GV         AV  ++  ++ GE +GVVGESG+GK+T+G  ++ 
Sbjct: 286 ILSCDDLKVWFPIRKGVIRRTVGHIKAVDGISFSLKAGETLGVVGESGSGKTTLGLGLLR 345

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L+S  G I       +G ++ GLS  AMR +R  ++  +FQDP  SL+P  +V   + E 
Sbjct: 346 LVSSQGAIV-----FSGTRLDGLSNTAMRPLR-RRLQIVFQDPYGSLSPRLSVGEIIGEG 399

Query: 116 IHANMQVSAEEAYQRAL--SLMKQVGI-PQPENRLKQYPHQFSGGMRQRVVIAIALAGEP 172
           +  +  ++ + A +RAL    + +VG+ P  ++R   YPH+FSGG RQR+ IA AL  +P
Sbjct: 400 LAVH-GLAGDRAGRRALVTQALSEVGLDPATQDR---YPHEFSGGQRQRIAIARALVLKP 455

Query: 173 DLIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDL 232
           ++I+ DEPT+ALDV++Q QI++L+R++  ++ +  + ++HD+ VV  +  +V VM  G +
Sbjct: 456 EVIVLDEPTSALDVTVQAQIVDLLRDIQTRHAIAYVFISHDLRVVRALAAQVLVMKDGKV 515

Query: 233 VEFGPTAKVLGTPEHPYTRSLISA 256
           VE G   ++   P H YTR+L++A
Sbjct: 516 VEAGSGEQIFQAPRHDYTRALLAA 539