Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  434 bits (1115), Expect = e-126
 Identities = 252/557 (45%), Positives = 338/557 (60%), Gaps = 35/557 (6%)

Query: 4   LEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTI 63
           L + +LR+  P       A+  ++L +   EIV +VGESG+GKS    A++ LL P   I
Sbjct: 13  LIIDDLRVALPKSADRPFALNGISLTVGADEIVCLVGESGSGKSMTAGAIMRLLGPSTPI 72

Query: 64  AGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVS 123
            GG + L G  + GLS  AMR VRG+++G IFQ+PMT+LNPL T+  Q+ ET   +  + 
Sbjct: 73  TGGRILLEGVDLLGLSEAAMRAVRGARVGMIFQEPMTALNPLHTIGDQIAETFRTHGTLG 132

Query: 124 AEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTA 183
             E  +R L L+ +V IP P    K YPH+ SGG RQR +IA+ALA EP L+IADEPTTA
Sbjct: 133 RAEIERRVLDLLAEVLIPDPVAAAKAYPHELSGGQRQRAMIAMALALEPALLIADEPTTA 192

Query: 184 LDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLG 243
           LDV+ Q QIL LIR+L ++   G + VTHD GVV+ + DRVAVM  G++VE G  A+VL 
Sbjct: 193 LDVTTQAQILALIRDLQRRKGTGVLFVTHDFGVVAEIADRVAVMRGGEVVEEGAAAQVLN 252

Query: 244 TPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTG-PL 302
            P HPYTR+LI+AVP         PLV                         R  TG PL
Sbjct: 253 HPLHPYTRALIAAVP---------PLV---------------------PAPPRPVTGPPL 282

Query: 303 LKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGL 362
           L+VE ++  +      F        A  +VSF +  G T G+VGESGSGKST+AR +  L
Sbjct: 283 LRVEGLSKTY-RSGGFFGRGGRVTHAVKDVSFTLRRGATLGIVGESGSGKSTLARCVVRL 341

Query: 363 YQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHK 422
               +G +  + IDL+AL      R  RR +QMVFQ+PY S+NPR ++ +++A+      
Sbjct: 342 LTSESGSIHLDDIDLSALTDNDWHRESRR-IQMVFQDPYGSLNPRRRVGELVAQGPIVRG 400

Query: 423 LTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPT 482
             R E E R  V +L   VGL   A  ++PHEFSGGQRQRI +ARALA  P +L+ DE  
Sbjct: 401 APRREVEAR--VRELFALVGLDPKAVDRFPHEFSGGQRQRIGLARALALDPDVLVADEAV 458

Query: 483 SALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQL 542
           SALDVSVQAQ+L LL DL++ LNL++LFI+HDL V  Q+ D + VM+ G ++E  PT ++
Sbjct: 459 SALDVSVQAQVLALLADLRERLNLSVLFITHDLRVAGQIADDILVMKDGAVVEAGPTARV 518

Query: 543 FTDPQHEYSKKLISLMP 559
           F DP H Y+K L++ +P
Sbjct: 519 FADPHHPYTKTLMAAVP 535



 Score =  162 bits (411), Expect = 3e-44
 Identities = 103/263 (39%), Positives = 152/263 (57%), Gaps = 16/263 (6%)

Query: 3   LLEVKNLRIEYPS-----RHG-VHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDL 56
           LL V+ L   Y S     R G V  AVK ++  ++RG  +G+VGESG+GKST+   V+ L
Sbjct: 282 LLRVEGLSKTYRSGGFFGRGGRVTHAVKDVSFTLRRGATLGIVGESGSGKSTLARCVVRL 341

Query: 57  LSPPGTIAGGEVYLNGEKISGLSPQAM-REVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L    T   G ++L+   +S L+     RE R  +I  +FQDP  SLNP   V   + + 
Sbjct: 342 L----TSESGSIHLDDIDLSALTDNDWHRESR--RIQMVFQDPYGSLNPRRRVGELVAQG 395

Query: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175
                     E   R   L   VG+      + ++PH+FSGG RQR+ +A ALA +PD++
Sbjct: 396 PIVR-GAPRREVEARVRELFALVGLDP--KAVDRFPHEFSGGQRQRIGLARALALDPDVL 452

Query: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235
           +ADE  +ALDVS+Q Q+L L+ +L ++ N+  + +THD+ V   + D + VM  G +VE 
Sbjct: 453 VADEAVSALDVSVQAQVLALLADLRERLNLSVLFITHDLRVAGQIADDILVMKDGAVVEA 512

Query: 236 GPTAKVLGTPEHPYTRSLISAVP 258
           GPTA+V   P HPYT++L++AVP
Sbjct: 513 GPTARVFADPHHPYTKTLMAAVP 535