Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

 Score =  390 bits (1002), Expect = e-113
 Identities = 227/558 (40%), Positives = 334/558 (59%), Gaps = 35/558 (6%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           +L V++L I  P       AV  ++ D+  G++V ++GESG+GKS + +A++ LL P   
Sbjct: 10  VLSVRDLTIALPPGADRPHAVSDISFDVPPGKVVCLLGESGSGKSVIASAIMGLLPPGLR 69

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122
              G + L G+ +   S  A+R +RG+ +  +FQ+PMT+LNP+ T   Q+ E +  +++ 
Sbjct: 70  PVKGAIELRGQALLSCSQAALRALRGTTMAMVFQEPMTALNPVMTCGAQIDEMLAQHVKR 129

Query: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182
              E     L++M++V +P+PE     YPHQ SGG RQR+VIA+AL  +P L+I DEPTT
Sbjct: 130 PKAERRAAILAIMERVRLPEPERIYASYPHQLSGGQRQRIVIAMALILKPALLICDEPTT 189

Query: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242
           ALDV+ Q +IL LI EL ++N    + +THD GVV+ + D V V+  G ++E G    VL
Sbjct: 190 ALDVTTQAEILKLILELQRENGTAVLFITHDFGVVAEIADEVVVLELGAMIEKGDKHAVL 249

Query: 243 GTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGPL 302
             P  PYT+ L++AVP                   EL P D         +   +   PL
Sbjct: 250 TAPRQPYTKMLLAAVP-------------------ELSPPD---------RPAVENAYPL 281

Query: 303 LKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGL 362
           L+ +++   +V+    +  +R  VQA+  VS  V  GET G+VGESGSGKST+AR IA L
Sbjct: 282 LQAKDLCKTYVSGG--WPGKRRVVQAAKGVSLMVRPGETIGIVGESGSGKSTVARCIARL 339

Query: 363 YQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAE-PIRFH 421
             P +G +  +G  + A  ++ E  P RR +Q+VFQ+PY S+NPR  + + I E P+ F 
Sbjct: 340 IDPTSGDIFADGRSV-ATATKRELSPFRRHVQVVFQDPYRSLNPRQTVGESIIEGPVNFG 398

Query: 422 KLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEP 481
            + R+E+  +    +L+  V L   A  +YP+EFSGGQRQRISIARALA  P++LI DE 
Sbjct: 399 -VPRAEAWAK--AEELMHLVRLKPDALRRYPNEFSGGQRQRISIARALACNPKVLIADEA 455

Query: 482 TSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQ 541
            SALDVSVQAQIL LL+++Q  L + +LF++HDL V  Q+CD V VM  G ++E      
Sbjct: 456 VSALDVSVQAQILTLLEEIQGRLRIGILFVTHDLRVASQICDHVLVMYKGEIVEEGAIRD 515

Query: 542 LFTDPQHEYSKKLISLMP 559
           +F  P+H Y++KL++  P
Sbjct: 516 VFFAPRHPYTRKLLAASP 533



 Score =  180 bits (456), Expect = 1e-49
 Identities = 105/264 (39%), Positives = 154/264 (58%), Gaps = 13/264 (4%)

Query: 3   LLEVKNLRIEY-----PSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLL 57
           LL+ K+L   Y     P +  V  A K ++L ++ GE +G+VGESG+GKSTV   +  L+
Sbjct: 281 LLQAKDLCKTYVSGGWPGKRRVVQAAKGVSLMVRPGETIGIVGESGSGKSTVARCIARLI 340

Query: 58  SPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIH 117
            P      G+++ +G  ++  + + +   R   +  +FQDP  SLNP  TV   + E   
Sbjct: 341 DP----TSGDIFADGRSVATATKRELSPFR-RHVQVVFQDPYRSLNPRQTVGESIIEG-P 394

Query: 118 ANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIA 177
            N  V   EA+ +A  LM  V +    + L++YP++FSGG RQR+ IA ALA  P ++IA
Sbjct: 395 VNFGVPRAEAWAKAEELMHLVRLKP--DALRRYPNEFSGGQRQRISIARALACNPKVLIA 452

Query: 178 DEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGP 237
           DE  +ALDVS+Q QIL L+ E+  +  +G + VTHD+ V S + D V VMY+G++VE G 
Sbjct: 453 DEAVSALDVSVQAQILTLLEEIQGRLRIGILFVTHDLRVASQICDHVLVMYKGEIVEEGA 512

Query: 238 TAKVLGTPEHPYTRSLISAVPRSD 261
              V   P HPYTR L++A P  D
Sbjct: 513 IRDVFFAPRHPYTRKLLAASPGRD 536



 Score =  162 bits (411), Expect = 2e-44
 Identities = 97/241 (40%), Positives = 139/241 (57%), Gaps = 7/241 (2%)

Query: 328 ASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNA----GRVTFEGIDLTALKSE 383
           A +++SF V  G+   L+GESGSGKS IA  I GL  P      G +   G  L +    
Sbjct: 29  AVSDISFDVPPGKVVCLLGESGSGKSVIASAIMGLLPPGLRPVKGAIELRGQALLSCSQA 88

Query: 384 HERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGL 443
             R      M MVFQ P T++NP M     I E +  H + R ++E R  +  ++E V L
Sbjct: 89  ALRALRGTTMAMVFQEPMTALNPVMTCGAQIDEMLAQH-VKRPKAERRAAILAIMERVRL 147

Query: 444 GKMAGL--KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQ 501
            +   +   YPH+ SGGQRQRI IA AL  +P LLICDEPT+ALDV+ QA+IL L+ +LQ
Sbjct: 148 PEPERIYASYPHQLSGGQRQRIVIAMALILKPALLICDEPTTALDVTTQAEILKLILELQ 207

Query: 502 DELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPEF 561
            E    +LFI+HD  V+ ++ D V V+++G ++E      + T P+  Y+K L++ +PE 
Sbjct: 208 RENGTAVLFITHDFGVVAEIADEVVVLELGAMIEKGDKHAVLTAPRQPYTKMLLAAVPEL 267

Query: 562 T 562
           +
Sbjct: 268 S 268