Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 536 a.a., oligopeptide/dipeptide ABC transporter, ATP-binding protein from Phaeobacter inhibens DSM 17395

 Score =  435 bits (1118), Expect = e-126
 Identities = 237/554 (42%), Positives = 344/554 (62%), Gaps = 34/554 (6%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           LL V++LR+ +     V  AV+ ++  + RGE V +VGESG+GKS    + + LL    T
Sbjct: 14  LLSVRDLRVSFRQDGKVTEAVRGVSFSVGRGETVALVGESGSGKSVSALSTVSLLGDSAT 73

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122
           ++G   Y +G ++ G S + +R+VRG+ I FIFQ+PMTSLNPL T+E QL E++  +  +
Sbjct: 74  VSGSVTY-DGTEMVGASERHLRQVRGNDISFIFQEPMTSLNPLHTIEKQLAESLALHQGL 132

Query: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182
               A +R + L+ +VGI   E RL  YPHQ SGG RQRV+IA+ALA +PD++IADEPTT
Sbjct: 133 GGAAARERIVDLLNRVGIRDAETRLDAYPHQLSGGQRQRVMIAMALANKPDILIADEPTT 192

Query: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242
           ALDV+IQ QIL+L+ +L     +G + +THD+ +V  + DRV VM  G++VE GPTA++ 
Sbjct: 193 ALDVTIQVQILDLLADLKASEGMGLLFITHDLSIVRRIADRVCVMQAGEIVESGPTAEIF 252

Query: 243 GTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGPL 302
             P+HPYTR L+ A P                               GQ Q   K    L
Sbjct: 253 ANPQHPYTRKLLDAEP------------------------------TGQPQPVSKDAKEL 282

Query: 303 LKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGL 362
           ++ E++ + F  +    +    +V+A N  S +V  GET G+VGESGSGK+T+A  I  L
Sbjct: 283 IRTEDLKVWFPIQKGFLKRTVGHVKAVNPTSLSVRAGETLGIVGESGSGKTTLALAIMRL 342

Query: 363 YQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHK 422
              + GRV F+G DL    +   RR LR  MQ+VFQ+P+ +++PRM    IIAE +  H 
Sbjct: 343 I-ASEGRVEFQGQDLRQWSTRDLRR-LRADMQIVFQDPFGALSPRMTCAQIIAEGLAIHN 400

Query: 423 LTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPT 482
           + + + + R +V +++  VGL      +YPHEFSGGQRQRI+IARA+  RP+L++ DEPT
Sbjct: 401 VDQ-DRDPRDLVAEVMSEVGLDPAFMDRYPHEFSGGQRQRIAIARAMVLRPKLVVLDEPT 459

Query: 483 SALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQL 542
           SALD++VQ QI+NLL+DLQ+   L  LFISHDL V+R M  ++ VM+ G ++E     +L
Sbjct: 460 SALDMTVQVQIVNLLRDLQERYGLAYLFISHDLNVVRAMSHKMIVMKQGDVVEAGSAAEL 519

Query: 543 FTDPQHEYSKKLIS 556
           F +P   Y+++L++
Sbjct: 520 FNNPSDPYTQQLLA 533



 Score =  191 bits (486), Expect = 5e-53
 Identities = 112/276 (40%), Positives = 159/276 (57%), Gaps = 13/276 (4%)

Query: 289 LGQSQDHRKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGES 348
           +G S    +   PLL V ++ + F     + E+ R        VSF+V  GET  LVGES
Sbjct: 1   MGNSMTVTQKPTPLLSVRDLRVSFRQDGKVTEAVR-------GVSFSVGRGETVALVGES 53

Query: 349 GSGKSTIARVIAGLYQPNA---GRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMN 405
           GSGKS  A     L   +A   G VT++G ++      H R+     +  +FQ P TS+N
Sbjct: 54  GSGKSVSALSTVSLLGDSATVSGSVTYDGTEMVGASERHLRQVRGNDISFIFQEPMTSLN 113

Query: 406 PRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRI 463
           P   I   +AE +  H+     +   +IV DLL  VG+         YPH+ SGGQRQR+
Sbjct: 114 PLHTIEKQLAESLALHQGLGGAAARERIV-DLLNRVGIRDAETRLDAYPHQLSGGQRQRV 172

Query: 464 SIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCD 523
            IA ALA +P +LI DEPT+ALDV++Q QIL+LL DL+    + +LFI+HDL ++R++ D
Sbjct: 173 MIAMALANKPDILIADEPTTALDVTIQVQILDLLADLKASEGMGLLFITHDLSIVRRIAD 232

Query: 524 RVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMP 559
           RV VMQ G ++E  PT ++F +PQH Y++KL+   P
Sbjct: 233 RVCVMQAGEIVESGPTAEIFANPQHPYTRKLLDAEP 268



 Score =  154 bits (389), Expect = 9e-42
 Identities = 85/261 (32%), Positives = 153/261 (58%), Gaps = 15/261 (5%)

Query: 3   LLEVKNLRIEYPSRHGV------HA-AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVID 55
           L+  ++L++ +P + G       H  AV   +L ++ GE +G+VGESG+GK+T+  A++ 
Sbjct: 282 LIRTEDLKVWFPIQKGFLKRTVGHVKAVNPTSLSVRAGETLGIVGESGSGKTTLALAIMR 341

Query: 56  LLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTET 115
           L++     + G V   G+ +   S + +R +R   +  +FQDP  +L+P  T    + E 
Sbjct: 342 LIA-----SEGRVEFQGQDLRQWSTRDLRRLRAD-MQIVFQDPFGALSPRMTCAQIIAEG 395

Query: 116 IHANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLI 175
           +  +      +       +M +VG+      + +YPH+FSGG RQR+ IA A+   P L+
Sbjct: 396 LAIHNVDQDRDPRDLVAEVMSEVGLDPAF--MDRYPHEFSGGQRQRIAIARAMVLRPKLV 453

Query: 176 IADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEF 235
           + DEPT+ALD+++Q QI+NL+R+L ++  +  + ++HD+ VV  ++ ++ VM +GD+VE 
Sbjct: 454 VLDEPTSALDMTVQVQIVNLLRDLQERYGLAYLFISHDLNVVRAMSHKMIVMKQGDVVEA 513

Query: 236 GPTAKVLGTPEHPYTRSLISA 256
           G  A++   P  PYT+ L++A
Sbjct: 514 GSAAELFNNPSDPYTQQLLAA 534