Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., oligopeptide/dipeptide ABC transporter, ATP-binding protein from Dechlorosoma suillum PS

 Score =  438 bits (1127), Expect = e-127
 Identities = 262/616 (42%), Positives = 357/616 (57%), Gaps = 56/616 (9%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
           LL V+NL+  + +   V  AV  ++  +  GE   ++GESG GKS    A++ LL   G 
Sbjct: 4   LLSVRNLKAGFLAGGRVLTAVDGVSFAVAPGETFALLGESGCGKSATALALLRLLPNAGR 63

Query: 63  IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQV 122
           I GGEV+L GE+I  L   AMR+ RGS    IFQ+P TSLNP+ T+  Q+ E++  +  +
Sbjct: 64  IQGGEVWLEGEEILALPEAAMRDRRGSAAAMIFQEPATSLNPVLTIGRQIGESLERHRGM 123

Query: 123 SAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTT 182
             E A + AL+L+  VGI  PE RL++YP Q SGGM+QR +IAIALAGEP L+IADEPTT
Sbjct: 124 KGEAARREALALLTAVGIADPERRLEEYPFQLSGGMKQRAMIAIALAGEPRLLIADEPTT 183

Query: 183 ALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVL 242
           ALDV+IQ QIL+L+  L  +  +G +L+THD+GVV+    RV VMY G++VE  P  +  
Sbjct: 184 ALDVTIQAQILDLLARLQAERAMGMLLITHDLGVVARSAHRVGVMYAGEIVETAPRQEFF 243

Query: 243 GTPEHPYTRSLISAV------------------------------PRSDRKLDRFPLVSY 272
            +P HPYT+ L +A+                              PR    +DR  L S 
Sbjct: 244 ASPRHPYTQKLFAALPDLGQRGAQLATIPGQVPGLAAMPAGCRFAPRCPVAMDRCRLES- 302

Query: 273 IEEAKELKP-LDVKSHWLGQSQDHRKYTGP-------------------LLKVENVNLRF 312
                EL+    V+ HW+ Q     +   P                   LL V  + + F
Sbjct: 303 -PGWTELEAGHQVRCHWVAQQLPGGEQRLPDLPAAPPAAAAAADAARENLLAVGELKVHF 361

Query: 313 VTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTF 372
             +  LF+    +V+A + VS  +  G T  LVGESG GK+T  + +  L  P  G V  
Sbjct: 362 PIRKGLFKRTVGHVKAVDGVSLELQRGRTLALVGESGCGKTTAGKAVLRLL-PATGSVRL 420

Query: 373 EGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQ 432
           +G +L  L  E E +PLRR+MQMVFQ+P+ S+NPR+ + +II E +   ++  S  E R 
Sbjct: 421 DGRELLGL-PERELKPLRRRMQMVFQDPFASLNPRLTVGEIIEEGMTALRVAASRDERRA 479

Query: 433 IVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQ 492
            +  LLE VGL   A  +YPHEFSGGQRQRI+IARALA +P LL+CDEPTSALDVSVQAQ
Sbjct: 480 ALAALLESVGLPAEALGRYPHEFSGGQRQRIAIARALAVQPELLVCDEPTSALDVSVQAQ 539

Query: 493 ILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSK 552
           ILNLL+ LQ+EL L  LFI+H+  V+  +   V VM +G ++E  P +Q+   P H Y++
Sbjct: 540 ILNLLRRLQEELGLAYLFITHNFAVVEYLAHDVAVMYLGRIVEQGPVQQVLAAPCHPYTR 599

Query: 553 KLISLMPE--FTGLRE 566
            L+S +PE    G RE
Sbjct: 600 ALLSAVPEPRLAGQRE 615



 Score =  201 bits (510), Expect = 1e-55
 Identities = 119/280 (42%), Positives = 175/280 (62%), Gaps = 22/280 (7%)

Query: 2   SLLEVKNLRIEYPSRHGVHA-------AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVI 54
           +LL V  L++ +P R G+         AV  ++L++QRG  + +VGESG GK+T G AV+
Sbjct: 350 NLLAVGELKVHFPIRKGLFKRTVGHVKAVDGVSLELQRGRTLALVGESGCGKTTAGKAVL 409

Query: 55  DLLSPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTE 114
            LL      A G V L+G ++ GL  + ++ +R  ++  +FQDP  SLNP  TV   + E
Sbjct: 410 RLLP-----ATGSVRLDGRELLGLPERELKPLR-RRMQMVFQDPFASLNPRLTVGEIIEE 463

Query: 115 TIHANMQVSAEEAYQRAL--SLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEP 172
            + A ++V+A    +RA   +L++ VG+P     L +YPH+FSGG RQR+ IA ALA +P
Sbjct: 464 GMTA-LRVAASRDERRAALAALLESVGLPA--EALGRYPHEFSGGQRQRIAIARALAVQP 520

Query: 173 DLIIADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDL 232
           +L++ DEPT+ALDVS+Q QILNL+R L ++  +  + +TH+  VV  +   VAVMY G +
Sbjct: 521 ELLVCDEPTSALDVSVQAQILNLLRRLQEELGLAYLFITHNFAVVEYLAHDVAVMYLGRI 580

Query: 233 VEFGPTAKVLGTPEHPYTRSLISAVPR----SDRKLDRFP 268
           VE GP  +VL  P HPYTR+L+SAVP       R++ R P
Sbjct: 581 VEQGPVQQVLAAPCHPYTRALLSAVPEPRLAGQREMVRLP 620