Pairwise Alignments
Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056
Subject, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv
Score = 216 bits (551), Expect = 2e-60
Identities = 110/235 (46%), Positives = 164/235 (69%), Gaps = 3/235 (1%)
Query: 326 VQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHE 385
V+A + +S + +G T G+VGESGSGKST I L P +G + G D+ L + E
Sbjct: 374 VRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQSGSIEVLGTDVATLGTA-E 432
Query: 386 RRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGK 445
RR LRR +Q+VFQ+P S++PR+ +FD+IAEP++ + ++E+ R V +LL+ VGL
Sbjct: 433 RRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGKNETHAR--VAELLDIVGLRH 490
Query: 446 MAGLKYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELN 505
+YP EFSGGQ+QRI IARALA +P++L DEP SALDVS+QA I+NLL DLQ++
Sbjct: 491 GDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIINLLLDLQEQFG 550
Query: 506 LTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKKLISLMPE 560
L+ LF+SHDL V++ + +V VM GT++E +E++F +P+HEY+++L+ +P+
Sbjct: 551 LSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRLLGAVPQ 605
Score = 211 bits (536), Expect = 9e-59
Identities = 113/260 (43%), Positives = 163/260 (62%), Gaps = 2/260 (0%)
Query: 3 LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGT 62
LLEV +L + + + AV+ ++ ++ GE+V +VGESG+GKS AV+ LL P
Sbjct: 4 LLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLL-PEYA 62
Query: 63 IAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANM-Q 121
G V L G ++ GL+ AM RG IG +FQDPM++L P++TV Q+ E I + +
Sbjct: 63 QVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPR 122
Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
V + A +RA+ L+ VGI QP+ R + +PH+ SGG RQRVVIAIA+A +PDL+I DEPT
Sbjct: 123 VGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
TALDV++Q QIL++++ G +++THD+GVV+ DR VMY G +VE +
Sbjct: 183 TALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVNDL 242
Query: 242 LGTPEHPYTRSLISAVPRSD 261
PYT L+ +VPR D
Sbjct: 243 YRDRRMPYTVGLLGSVPRLD 262
Score = 160 bits (406), Expect = 1e-43
Identities = 91/240 (37%), Positives = 145/240 (60%), Gaps = 8/240 (3%)
Query: 22 AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQ 81
AV ++L++++G +G+VGESG+GKST + +++L +P G + + G ++ L
Sbjct: 376 AVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQS----GSIEVLGTDVATLGTA 431
Query: 82 AMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVSAEEAYQRALSLMKQVGIP 141
R +R I +FQDP+ SL+P V + E + AN E + R L+ VG+
Sbjct: 432 ERRSLRRD-IQVVFQDPVASLDPRLPVFDLIAEPLQAN-GFGKNETHARVAELLDIVGLR 489
Query: 142 QPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCK 201
+ +YP +FSGG +QR+ IA ALA +P ++ DEP +ALDVSIQ I+NL+ +L +
Sbjct: 490 HGD--ASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIINLLLDLQE 547
Query: 202 KNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISAVPRSD 261
+ + + V+HD+ VV ++ +VAVM G +VE G + +V G P+H YTR L+ AVP+ D
Sbjct: 548 QFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKHEYTRRLLGAVPQPD 607
Score = 160 bits (405), Expect = 1e-43
Identities = 100/264 (37%), Positives = 145/264 (54%), Gaps = 12/264 (4%)
Query: 301 PLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIA 360
PLL+V ++ + F T + V A +S+ V GE +VGESGSGKS A +
Sbjct: 3 PLLEVTDLAVTFRTDG-------DPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVV 55
Query: 361 GL---YQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEP 417
GL Y G V +G +L L R + + VFQ+P +++ P + D IAE
Sbjct: 56 GLLPEYAQVRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEA 115
Query: 418 IRFHKLTRSESETRQIVNDLLEHVGLGK--MAGLKYPHEFSGGQRQRISIARALATRPRL 475
I H+ + R+ +LL+ VG+ + +PHE SGG+RQR+ IA A+A P L
Sbjct: 116 IEVHQPRVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDL 175
Query: 476 LICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLE 535
LICDEPT+ALDV+VQAQIL++LK +D +L I+HDL V+ + DR VM G ++E
Sbjct: 176 LICDEPTTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVE 235
Query: 536 VAPTEQLFTDPQHEYSKKLISLMP 559
A L+ D + Y+ L+ +P
Sbjct: 236 SAGVNDLYRDRRMPYTVGLLGSVP 259