Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., ABC transporter related (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  420 bits (1080), Expect = e-122
 Identities = 235/555 (42%), Positives = 345/555 (62%), Gaps = 34/555 (6%)

Query: 2   SLLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG 61
           ++L+V+NLR+ +     V  AVK ++ D+ +GE V +VGESG+GKS    + + LL    
Sbjct: 4   AVLQVRNLRVGFRQDGQVTEAVKGVSFDVAQGETVALVGESGSGKSVTALSTVSLLPDSA 63

Query: 62  TIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQ 121
            ++G   Y   E + G   + +R VRG+ + FIFQ+PMTSLNPL  +E Q+TE++  +  
Sbjct: 64  EVSGSITYAGTEMV-GAPERDLRRVRGNDVSFIFQEPMTSLNPLHPLEKQITESLTLHQG 122

Query: 122 VSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPT 181
           ++ + A  R + L+++VGI   E+RL  YPHQ SGG RQRV+IA+ALA  PDL+IADEPT
Sbjct: 123 LTGDAARARVIELLEKVGIRDAESRLGAYPHQLSGGQRQRVMIAMALANGPDLLIADEPT 182

Query: 182 TALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKV 241
           TALDV+IQ QIL+L+ +L +   +  + +THD+ +V  + DRV VM  G++VE GPTA++
Sbjct: 183 TALDVTIQAQILDLLADLKEAEGMSLLFITHDLTIVRRIADRVCVMQGGEIVETGPTAEI 242

Query: 242 LGTPEHPYTRSLISAVPRSDRKLDRFPLVSYIEEAKELKPLDVKSHWLGQSQDHRKYTGP 301
              P+HPYTR L++A P    + D  P     E+A  +   D    W             
Sbjct: 243 FANPQHPYTRKLLAAEPSG--QPDPVP-----EDAPVVAETDSLKVW------------- 282

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
                     F  +  +      +V+A NN +  V  GET G+VGESGSGK+T+A  I  
Sbjct: 283 ----------FPIQRGILRRTVGHVKAVNNATLNVRAGETLGVVGESGSGKTTLALAILR 332

Query: 362 LYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFH 421
           L   + GR+ + G ++   KS   RR LR+ MQ+VFQ+PY S++PRM I  IIAE +  H
Sbjct: 333 LIS-SEGRIVYAGENIQGWKSRDLRR-LRKDMQVVFQDPYGSLSPRMTIAQIIAEGLGVH 390

Query: 422 KLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARALATRPRLLICDEP 481
            L    ++ R++V ++L  VGL      +YPHEFSGGQRQRI+IARA+  RP+L++ DEP
Sbjct: 391 GL-EPGADPRRMVAEILVEVGLDPAMMDRYPHEFSGGQRQRIAIARAMILRPKLVVLDEP 449

Query: 482 TSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQ 541
           TSALD++VQ QI+ LL+ LQ +  L  +FISHDL V+R +  +V VM+ G ++E+    Q
Sbjct: 450 TSALDMTVQVQIVELLRALQRKYGLAYIFISHDLKVVRALSHKVIVMRQGDVVEMGEGRQ 509

Query: 542 LFTDPQHEYSKKLIS 556
           +F  P+ +Y+K+L++
Sbjct: 510 IFERPRSDYTKQLLA 524



 Score =  189 bits (479), Expect = 3e-52
 Identities = 103/246 (41%), Positives = 149/246 (60%), Gaps = 6/246 (2%)

Query: 319 FESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAGLYQPNA---GRVTFEGI 375
           F    +  +A   VSF V +GET  LVGESGSGKS  A     L   +A   G +T+ G 
Sbjct: 15  FRQDGQVTEAVKGVSFDVAQGETVALVGESGSGKSVTALSTVSLLPDSAEVSGSITYAGT 74

Query: 376 DLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIFDIIAEPIRFHKLTRSESETRQIVN 435
           ++        RR     +  +FQ P TS+NP   +   I E +  H+    ++   +++ 
Sbjct: 75  EMVGAPERDLRRVRGNDVSFIFQEPMTSLNPLHPLEKQITESLTLHQGLTGDAARARVI- 133

Query: 436 DLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARALATRPRLLICDEPTSALDVSVQAQI 493
           +LLE VG+         YPH+ SGGQRQR+ IA ALA  P LLI DEPT+ALDV++QAQI
Sbjct: 134 ELLEKVGIRDAESRLGAYPHQLSGGQRQRVMIAMALANGPDLLIADEPTTALDVTIQAQI 193

Query: 494 LNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQMGTLLEVAPTEQLFTDPQHEYSKK 553
           L+LL DL++   +++LFI+HDL ++R++ DRV VMQ G ++E  PT ++F +PQH Y++K
Sbjct: 194 LDLLADLKEAEGMSLLFITHDLTIVRRIADRVCVMQGGEIVETGPTAEIFANPQHPYTRK 253

Query: 554 LISLMP 559
           L++  P
Sbjct: 254 LLAAEP 259



 Score =  158 bits (399), Expect = 6e-43
 Identities = 91/259 (35%), Positives = 153/259 (59%), Gaps = 15/259 (5%)

Query: 5   EVKNLRIEYPSRHGV------HA-AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLL 57
           E  +L++ +P + G+      H  AV + TL+++ GE +GVVGESG+GK+T+  A++ L+
Sbjct: 275 ETDSLKVWFPIQRGILRRTVGHVKAVNNATLNVRAGETLGVVGESGSGKTTLALAILRLI 334

Query: 58  SPPGTIAGGEVYLNGEKISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIH 117
           S  G I    VY  GE I G   + +R +R   +  +FQDP  SL+P  T+   + E + 
Sbjct: 335 SSEGRI----VYA-GENIQGWKSRDLRRLR-KDMQVVFQDPYGSLSPRMTIAQIIAEGLG 388

Query: 118 ANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIA 177
            +      +  +    ++ +VG+      + +YPH+FSGG RQR+ IA A+   P L++ 
Sbjct: 389 VHGLEPGADPRRMVAEILVEVGLDPA--MMDRYPHEFSGGQRQRIAIARAMILRPKLVVL 446

Query: 178 DEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGP 237
           DEPT+ALD+++Q QI+ L+R L +K  +  + ++HD+ VV  ++ +V VM +GD+VE G 
Sbjct: 447 DEPTSALDMTVQVQIVELLRALQRKYGLAYIFISHDLKVVRALSHKVIVMRQGDVVEMGE 506

Query: 238 TAKVLGTPEHPYTRSLISA 256
             ++   P   YT+ L++A
Sbjct: 507 GRQIFERPRSDYTKQLLAA 525