Pairwise Alignments

Query, 571 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., dipeptide ABC transporter ATP-binding protein from Ralstonia sp. UNC404CL21Col

 Score =  454 bits (1168), Expect = e-132
 Identities = 263/570 (46%), Positives = 362/570 (63%), Gaps = 25/570 (4%)

Query: 3   LLEVKNLRIEYPSRHGVHAAVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPG- 61
           +++V++L + + +   V  AV++L+  + RGE + VVGESG+GKS    A++ L+   G 
Sbjct: 20  VVQVQDLSVRFATSERVVDAVRNLSFHVDRGETLAVVGESGSGKSVTSLALMRLVEHGGG 79

Query: 62  TIAGGEVYL---NGE--KISGLSPQAMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETI 116
            I GG+++L   NGE   ++  SP AMR VRG+ I  IFQ+PMTSLNP+FTV  Q+ E+I
Sbjct: 80  KIIGGQMHLRRRNGEVLDLANASPAAMRGVRGADIAMIFQEPMTSLNPVFTVGEQIAESI 139

Query: 117 HANMQVSAEEAYQRALSLMKQVGIPQPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLII 176
             +    A EA   AL +++ V IP+  N L +YPHQ SGGMRQRV+IA+AL+ +P L+I
Sbjct: 140 RLHQGKPASEAKAEALRMLELVRIPEARNVLGRYPHQLSGGMRQRVMIAMALSCKPSLLI 199

Query: 177 ADEPTTALDVSIQDQILNLIRELCKKNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFG 236
           ADEPTTALDV+IQ +IL LIR L ++ ++  + +THDMGVV+ V DRV VMY+GD VE G
Sbjct: 200 ADEPTTALDVTIQAEILQLIRALQQELHMAVVFITHDMGVVAEVADRVLVMYKGDRVEEG 259

Query: 237 PTAKVLGTPEHPYTRSLISAVPR--SDRKLD---RFPL--VSYIEEAKELKPLDVKSHWL 289
           P+A V   P HPYTR+L+SAVPR  S +  D   RFPL  V     A +  P    SH  
Sbjct: 260 PSATVFAQPAHPYTRALLSAVPRLGSMQGTDGPARFPLLRVDGTAAAVDTTPQPAASH-- 317

Query: 290 GQSQDHRKYTGPLLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESG 349
                      P+L+V ++  RF     +F      V A   VSF ++ GET  LVGESG
Sbjct: 318 --------DVQPILRVRDLVTRFDVPTGIFGRVTRRVHAVEQVSFDLYPGETLALVGESG 369

Query: 350 SGKSTIARVIAGLYQPNAGRVTFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMK 409
            GKST  R +  L    +G + F G ++  LK     + LRR +Q +FQ+P+ S++PR+ 
Sbjct: 370 CGKSTTGRSLLRLVDSQSGSIEFAGQNIGELKGP-ALQTLRRNIQFIFQDPFASLDPRVP 428

Query: 410 IFDIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGLKYPHEFSGGQRQRISIARAL 469
           +   I EP+  HK+  S  E +Q V  LL+ VGL      +YPHEFSGGQRQRI IARAL
Sbjct: 429 VGYSIMEPLLVHKVA-SGKEAQQRVEWLLDKVGLQAAHASRYPHEFSGGQRQRICIARAL 487

Query: 470 ATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQ 529
           A  P+++I DE  SALDVS+QAQI+NL+ DLQ E  +  LFISHD+ V+ ++  RV VM 
Sbjct: 488 ALNPKVVIADESVSALDVSIQAQIVNLMLDLQKEFGVAFLFISHDMAVVERISHRVAVMY 547

Query: 530 MGTLLEVAPTEQLFTDPQHEYSKKLISLMP 559
           +G ++E+ P   +F +PQH Y+KKL+S +P
Sbjct: 548 LGQIVEIGPRRAIFENPQHPYTKKLMSAVP 577



 Score =  187 bits (475), Expect = 1e-51
 Identities = 103/240 (42%), Positives = 149/240 (62%), Gaps = 7/240 (2%)

Query: 22  AVKSLTLDIQRGEIVGVVGESGAGKSTVGNAVIDLLSPPGTIAGGEVYLNGEKISGLSPQ 81
           AV+ ++ D+  GE + +VGESG GKST G +++ L+        G +   G+ I  L   
Sbjct: 348 AVEQVSFDLYPGETLALVGESGCGKSTTGRSLLRLVDSQS----GSIEFAGQNIGELKGP 403

Query: 82  AMREVRGSKIGFIFQDPMTSLNPLFTVEHQLTETIHANMQVSAEEAYQRALSLMKQVGIP 141
           A++ +R + I FIFQDP  SL+P   V + + E +  +   S +EA QR   L+ +VG+ 
Sbjct: 404 ALQTLRRN-IQFIFQDPFASLDPRVPVGYSIMEPLLVHKVASGKEAQQRVEWLLDKVGLQ 462

Query: 142 QPENRLKQYPHQFSGGMRQRVVIAIALAGEPDLIIADEPTTALDVSIQDQILNLIRELCK 201
                  +YPH+FSGG RQR+ IA ALA  P ++IADE  +ALDVSIQ QI+NL+ +L K
Sbjct: 463 AAH--ASRYPHEFSGGQRQRICIARALALNPKVVIADESVSALDVSIQAQIVNLMLDLQK 520

Query: 202 KNNVGCMLVTHDMGVVSNVTDRVAVMYRGDLVEFGPTAKVLGTPEHPYTRSLISAVPRSD 261
           +  V  + ++HDM VV  ++ RVAVMY G +VE GP   +   P+HPYT+ L+SAVP +D
Sbjct: 521 EFGVAFLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAIFENPQHPYTKKLMSAVPIAD 580



 Score =  176 bits (445), Expect = 3e-48
 Identities = 101/276 (36%), Positives = 160/276 (57%), Gaps = 20/276 (7%)

Query: 302 LLKVENVNLRFVTKDSLFESRREYVQASNNVSFAVHEGETFGLVGESGSGKSTIARVIAG 361
           +++V+++++RF T + +       V A  N+SF V  GET  +VGESGSGKS  +  +  
Sbjct: 20  VVQVQDLSVRFATSERV-------VDAVRNLSFHVDRGETLAVVGESGSGKSVTSLALMR 72

Query: 362 LYQPNAGRV----------TFEGIDLTALKSEHERRPLRRQMQMVFQNPYTSMNPRMKIF 411
           L +   G++            E +DL        R      + M+FQ P TS+NP   + 
Sbjct: 73  LVEHGGGKIIGGQMHLRRRNGEVLDLANASPAAMRGVRGADIAMIFQEPMTSLNPVFTVG 132

Query: 412 DIIAEPIRFHKLTRSESETRQIVNDLLEHVGLGKMAGL--KYPHEFSGGQRQRISIARAL 469
           + IAE IR H+  +  SE +     +LE V + +   +  +YPH+ SGG RQR+ IA AL
Sbjct: 133 EQIAESIRLHQ-GKPASEAKAEALRMLELVRIPEARNVLGRYPHQLSGGMRQRVMIAMAL 191

Query: 470 ATRPRLLICDEPTSALDVSVQAQILNLLKDLQDELNLTMLFISHDLPVIRQMCDRVGVMQ 529
           + +P LLI DEPT+ALDV++QA+IL L++ LQ EL++ ++FI+HD+ V+ ++ DRV VM 
Sbjct: 192 SCKPSLLIADEPTTALDVTIQAEILQLIRALQQELHMAVVFITHDMGVVAEVADRVLVMY 251

Query: 530 MGTLLEVAPTEQLFTDPQHEYSKKLISLMPEFTGLR 565
            G  +E  P+  +F  P H Y++ L+S +P    ++
Sbjct: 252 KGDRVEEGPSATVFAQPAHPYTRALLSAVPRLGSMQ 287