Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., ATP-dependent DNA helicase UvrD/PcrA from Pseudomonas fluorescens FW300-N2E2

 Score =  394 bits (1013), Expect = e-114
 Identities = 247/644 (38%), Positives = 367/644 (56%), Gaps = 16/644 (2%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN  Q +AV    G  LVLAGAGSGKTRV+ ++IA+L+Q       +I +VTFTNKAA E
Sbjct: 12  LNDAQRQAVAASVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFTNKAAAE 71

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-LT 121
           M+ R+ Q +G   + G+ V TFH L   ++R  ++  GL   F + D  DQ  L+K  + 
Sbjct: 72  MRHRIEQLMGINPA-GMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDDQQRLVKRVIR 130

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLL-FAHCFELYQKQMQSYNA 180
           E  LD  +   R     I+  K++ L P   +A   G+  L      +E Y+   Q    
Sbjct: 131 ELGLDEQRWPARQAQWFINGQKDEGLRPQHIQA--SGDLFLATMRSIYEAYEAACQRAGV 188

Query: 181 LDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVV 240
           +DF +L+L  + L R +  +   +Q R R++LVDE+QDTN  QY  ++LL      L VV
Sbjct: 189 IDFSELLLRALDLWRDHPGLLAHYQKRFRHVLVDEFQDTNAVQYAWLRLLAKGGDSLMVV 248

Query: 241 GDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQK 300
           GDDDQSIY WRGAK +N+     DFP  ++I+LEQNYRST+ IL+AAN LIANN     K
Sbjct: 249 GDDDQSIYGWRGAKIENIHQYSADFPDAEVIRLEQNYRSTAGILKAANALIANNTGRLGK 308

Query: 301 ALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEK 360
            L+++  EGE + +  A NE H+  R + E I           D AILYR N QSR++E+
Sbjct: 309 ELWTDGGEGEAINLYAAFNE-HDEARYVVETIESALKTGLARSDIAILYRSNAQSRVLEE 367

Query: 361 SLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEK 420
           +L + R+PY++ GG  FF RAEIK+ MAYLR++    +D A  R++N P R IG  T+E 
Sbjct: 368 ALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPTRGIGEKTVEA 427

Query: 421 LGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALV 480
           +  +A     S++ A  +L + + ++GR    L+ F + +  +A  A+ G     +  + 
Sbjct: 428 IRDHARHSHVSMWEAMHQLVVNKGMTGRAAGALKAFMDLIEDLA--AKCGEM--PLHLMT 483

Query: 481 RDIRYEDWL--YETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTL 538
           + +  +  L  Y  +   +  + R++N+ +L S    + E    D+    L   +   +L
Sbjct: 484 QTVIEQSGLIAYHEAEKGEKGQARVENLEELVS-AARNFESTEEDKDLTPLSAFLGHASL 542

Query: 539 RDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEE-NVEEERRL 597
                + +E++DS  +QLMTLH++KGLEFPYV+L+G EEG+ PH+ S++E   +EEERRL
Sbjct: 543 EAGDTQADEHEDS--IQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL 600

Query: 598 MYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIE 641
            YVGITRA + L     + RR +G       SRF+ E+P+  I+
Sbjct: 601 AYVGITRAMQNLVLTYAETRRLYGSETYNKVSRFVREVPKGLIQ 644