Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 729 a.a., Superfamily I DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  386 bits (992), Expect = e-111
 Identities = 249/641 (38%), Positives = 362/641 (56%), Gaps = 18/641 (2%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN  Q +AV    G  LVLAGAGSGKTRV+ ++IA+L Q       +I +VTFTNKAA E
Sbjct: 12  LNDAQRQAVAAPLGRQLVLAGAGSGKTRVLVHRIAWLNQVERASLHSILSVTFTNKAAAE 71

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-LT 121
           M++R+ Q L     +G+ V TFH L   ++R  ++   L   F + D  DQ  L+K  + 
Sbjct: 72  MRQRIEQLLHVNP-QGMWVGTFHGLAHRLLRAHWQEAKLAQNFQILDSDDQQRLVKRVIR 130

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHC--FELYQKQMQSYN 179
           E  LD  +   R     I+  K++ L P   + +  G    L      +E Y++      
Sbjct: 131 ELGLDEQRWPARQAQWWINAQKDEGLRP---RNIQPGGDLFLATQLKIYEAYEEACARAG 187

Query: 180 ALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTV 239
            +DF +L+L  + L R +  + + +Q R R++LVDE+QDTN  QY  ++LL      L V
Sbjct: 188 VIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLAKGGESLMV 247

Query: 240 VGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ 299
           VGDDDQSIY WRGA+ +NL    +DFP  + I+LEQNYRST+ IL+AAN LIANN     
Sbjct: 248 VGDDDQSIYGWRGARIENLHQFSQDFPDAETIRLEQNYRSTACILKAANALIANNQGRLG 307

Query: 300 KALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIE 359
           K L++   EGE + +  A NE H+  R + E I     +     + AILYR N QSR++E
Sbjct: 308 KELWTSGCEGEPISLYAAFNE-HDEARYVVESIEKAIRDGMSRSEIAILYRSNAQSRVLE 366

Query: 360 KSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLE 419
           ++L + ++PY++ GG  FF RAEIK+ MAYLR++   D+D A  R++N P R IG  T+E
Sbjct: 367 EALLREKIPYRIYGGQRFFERAEIKNAMAYLRLIQTRDNDAALERVINVPARGIGEKTVE 426

Query: 420 KLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRAL 479
            L   A  +G S++ A  +    + +SGR    L  F E +  +A   E G  +  +  L
Sbjct: 427 CLRQLAREQGLSMWAALHQAVGTKAVSGRAASALNGFVELVDTLALKVE-GMQLHNMAQL 485

Query: 480 VRDIRYEDWL-YETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTL 538
           V  I     L Y      + A+ R++N+ +L S   A    D+  +++  ++  +     
Sbjct: 486 V--IEQSGLLAYHRDEKGEKAQARVENLEELVS---AARAFDSYSEEDDDIQSPLAAFLD 540

Query: 539 RDMMERGEE--NDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEE-NVEEER 595
              +E GE+   D  D+VQLMTLH++KGLEFP V+L+G EEG+ PH+ S++E   +EEER
Sbjct: 541 HASLEAGEQQAGDHEDSVQLMTLHSAKGLEFPLVFLVGMEEGLFPHKMSLEESGRLEEER 600

Query: 596 RLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELP 636
           RL YVGITRA ++L     + RR +G       SRF+ E+P
Sbjct: 601 RLAYVGITRAMQQLVITYAETRRLYGSETYNKISRFVREIP 641