Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 669 a.a., ATP-dependent DNA helicase Rep from Pseudomonas stutzeri RCH2

 Score =  734 bits (1896), Expect = 0.0
 Identities = 371/674 (55%), Positives = 494/674 (73%), Gaps = 11/674 (1%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +LNPRQ EAV YV GP LVLAGAGSGKT VIT KIAYLVQQCG +AR+I A+TFTNKAAR
Sbjct: 3   RLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIQARHIVAMTFTNKAAR 62

Query: 62  EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
           EMKERV   L   E+RGL VSTFH LG+NIIR+E+  +G K GFS+FDD D  ALL ++ 
Sbjct: 63  EMKERVGSLLKGAEARGLTVSTFHNLGMNIIRKEYARMGYKPGFSIFDDGDIKALLTDIM 122

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
           +K+  GD D    + + I +WKND++ P +A A A+  ++   A  +  YQ+ +++YNA+
Sbjct: 123 QKEYSGD-DGADEIKNYIDSWKNDLILPDEALANARNPKEQTAAIVYLHYQRTLKAYNAV 181

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241
           DF+DLILLPV L + + ++ ++WQNRIRYLLVDEYQDTN SQY LVKLLVG R + TVVG
Sbjct: 182 DFNDLILLPVKLFQEHADILEKWQNRIRYLLVDEYQDTNASQYLLVKLLVGMRNQFTVVG 241

Query: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301
           DDDQSIY+WRGA+P+NL+LL ED+PSLK++ LEQNYRSTSRIL+ ANILIANNPHV++K 
Sbjct: 242 DDDQSIYAWRGARPENLMLLKEDYPSLKVVMLEQNYRSTSRILKCANILIANNPHVFEKQ 301

Query: 302 LFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKS 361
           L+SE+  G++++VI   NED E ERV  EI+      +  Y D+AILYRGN+Q++L+E  
Sbjct: 302 LWSEMGHGDEIRVIRTRNEDAECERVALEILTEHLRTQRPYSDFAILYRGNYQAKLMELK 361

Query: 362 LTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKL 421
           L  +++PY+LSGGTSFFAR E+KD+M+Y R+LVNPDDDNAFLR++N P+REIG  TLEKL
Sbjct: 362 LQHHQIPYRLSGGTSFFARQEVKDLMSYFRLLVNPDDDNAFLRVINVPRREIGSTTLEKL 421

Query: 422 GSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVR 481
           G+YA+ RG S++ A+ E+GL  HL  R  E L RF  W+  +         + A+R++V 
Sbjct: 422 GNYASERGISMYAAADEIGLGAHLDSRYAERLARFKHWMDNVRQQCVVNEPIAAIRSMVM 481

Query: 482 DIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQE---KTLKEVVQRLTL 538
           DI YE+WL + ++S K A+ RM NV     W + D   +  D+ E    T+++ + +L L
Sbjct: 482 DIDYENWLRQNASSDKVADARMGNV-----WFLVDALKNTLDKDEDGDMTIEDAIGKLVL 536

Query: 539 RDMMER-GEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEENVEEERRL 597
           RDM+ER  EE + ++ VQ+MT+HASKGLEFP VY+IG EE ILPH++SI+ + +EEERRL
Sbjct: 537 RDMLERQQEEEEGAEGVQMMTMHASKGLEFPSVYIIGFEEEILPHRSSIESDTIEEERRL 596

Query: 598 MYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVTQEERMAK 657
            YVGITRA+R L      +R+Q+GE+I  + SRFLDELP +D+ WE  ++    E + A+
Sbjct: 597 AYVGITRAKRNLALTFAAKRKQYGEVIDCTPSRFLDELPPEDLVWE-GQEDAPVEVKAAR 655

Query: 658 GQAHIANLRAMFKK 671
           G   +A +RAM K+
Sbjct: 656 GNDALAAMRAMLKR 669