Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., ATP-dependent DNA helicase UvrD from Pseudomonas syringae pv. syringae B728a

 Score =  384 bits (987), Expect = e-111
 Identities = 245/640 (38%), Positives = 357/640 (55%), Gaps = 18/640 (2%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN  Q +AV    G  LVLAGAGSGKTRV+ ++IA+L+Q       ++ +VTFTNKAA E
Sbjct: 12  LNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLMQVEQASPHSVLSVTFTNKAAAE 71

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-LT 121
           M+ R+ Q +G   + G+ V TFH L   ++R  ++  GL   F + D  DQ  L+K  + 
Sbjct: 72  MRHRIEQLMGISPA-GMWVGTFHGLAHRLLRAHWQEAGLVQTFQILDSDDQQRLVKRVMR 130

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLL-FAHCFELYQKQMQSYNA 180
           E  LD  +   R     I+  K++ L P   +A   G+  L      +E Y+   Q    
Sbjct: 131 ELGLDEQRWPARQAQWFINGQKDEGLRPKHIQA--SGDLFLTTMKSVYEAYEIACQRAGV 188

Query: 181 LDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVV 240
           +DF +L+L  + L R N  +   +Q R R++LVDE+QDTN  QY  ++LL      L VV
Sbjct: 189 IDFSELLLRALDLWRDNPGLLAHYQRRFRHVLVDEFQDTNAVQYAWLRLLAQGGDSLMVV 248

Query: 241 GDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQK 300
           GDDDQSIY WRGAK +N+     DFP  ++I+LEQNYRST+ IL+AAN LI NN     K
Sbjct: 249 GDDDQSIYGWRGAKIENIHQYSSDFPDTEVIRLEQNYRSTASILKAANGLIINNSGRLGK 308

Query: 301 ALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEK 360
            L++++ +GE + +  A NE H+  R + E I           D AILYR N QSR++E+
Sbjct: 309 ELWTDVGDGELINLYAAFNE-HDEARYVVETIESALKTGISRNDIAILYRSNAQSRVLEE 367

Query: 361 SLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEK 420
           +L + R+PY++ GG  FF RAEIK+ MAY+R+L    +D A  R++N P R IG  T+E 
Sbjct: 368 ALLRERIPYRIYGGQRFFERAEIKNAMAYMRLLEGRGNDAALERVINVPARGIGEKTVEA 427

Query: 421 LGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALV 480
           +  +A     S++ A   L   + L+GR    L  F E +  +A        +E    L+
Sbjct: 428 IREHARHADVSMWEAMRLLVANKGLTGRAATALGGFIELIENLA-----AKVMEMPLHLM 482

Query: 481 RDIRYED---WLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLT 537
                E      Y      +  + R++N+ +L S   A  E    ++    L   +   +
Sbjct: 483 TQTVIEQSGLITYHEQEKGEKGQARVENLEELVSAARA-FENHESEEDLTPLAAFLGHAS 541

Query: 538 LRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEE-NVEEERR 596
           L     + +E++DS  +QLMTLH++KGLEFP+V+L+G EEG+ PH+ S++E   +EEERR
Sbjct: 542 LEAGDTQAQEHEDS--IQLMTLHSAKGLEFPHVFLVGMEEGLFPHKMSLEEPGRLEEERR 599

Query: 597 LMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELP 636
           L YVGITRA ++L     + RR +G       SRF+ E+P
Sbjct: 600 LAYVGITRAMKQLVMTYAETRRLYGSETYNKVSRFVREIP 639