Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 794 a.a., ATP-dependent DNA helicase, Rep family from Synechococcus elongatus PCC 7942

 Score =  377 bits (967), Expect = e-108
 Identities = 268/726 (36%), Positives = 378/726 (52%), Gaps = 77/726 (10%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +LN  Q  AV++ SGP LV+AGAGSGKTR +T +IA+L++Q      NI AVTFTNKAA+
Sbjct: 8   QLNTSQRRAVEHYSGPLLVVAGAGSGKTRALTFRIAHLLRQHRVDPENILAVTFTNKAAK 67

Query: 62  EMKERV----AQTLGKGE------------------------SRGLMVSTFHTLGLNIIR 93
           EMKER+    AQ L + +                        ++ L + TFH +   I+R
Sbjct: 68  EMKERLERLFAQQLAELQYGQPFTTLREIEKTQLRSRVYREVTKDLWIGTFHAICARILR 127

Query: 94  REFKALGLKAG------FSLFDDQDQLALLKELTEKQLDGDKDLL--RLLLSTISNWKND 145
            +        G      FS+FD+ D   L+KE+   QL+ D      + +  TIS+ KN+
Sbjct: 128 FDIDKYCDPNGRRWTKQFSIFDENDVQGLIKEIVGNQLNLDTKKFEPKSVRYTISSAKNN 187

Query: 146 MLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQ 205
             +P + +      +  +    +  Y  Q+ + NALDFDDL+L+PV L R NE+V   W 
Sbjct: 188 GWSPDEFERQQPNYRGRVIGEVYRRYLDQLAANNALDFDDLLLIPVQLFRQNEQVLAYWH 247

Query: 206 NRIRYLLVDEYQDTNTSQYELVKLLV--GERGR---------LTVVGDDDQSIYSWRGAK 254
            R R++LVDEYQDTN +QY+L++LL   G   R         + VVGD DQSIYS+R A 
Sbjct: 248 QRFRHVLVDEYQDTNRTQYDLIRLLTTNGAETRDFDQWNHRSVFVVGDADQSIYSFRAAD 307

Query: 255 PQNLVLLGEDF-------PSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKALFSELA 307
              L+   +DF        +  ++KLE+NYRST  IL+AAN LI NN     K L     
Sbjct: 308 FTILMGFQDDFGDRLPDDDTRTMVKLEENYRSTENILQAANELIRNNTERIDKVLRPTRG 367

Query: 308 EGEKLKVILANNEDHEAERVIAEIIA----HKFLNRTEYRDYAILYRGNHQSRLIEKSLT 363
            GE +    A++E  EAE V+ +I      H  LN   + D+AILYR N QSR  E SL 
Sbjct: 368 SGEAIACYRADDEMAEAEYVVQQIRQLEQQHPELN---WGDFAILYRTNAQSRAFEDSLV 424

Query: 364 QNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGS 423
           +  VPY + GG  F+ R E+KDI+AYLR + NP D  + LR+VN PKR +G  T+ +L  
Sbjct: 425 RWNVPYTVIGGLRFYDRREVKDILAYLRAIANPFDAVSLLRVVNVPKRGVGKTTIGRLVD 484

Query: 424 YANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDI 483
            A      L+    +    Q+L+GR  + +  F   +    D A+     E +R L+   
Sbjct: 485 AAQELNVPLWEILSDSETVQNLAGRSAKGILEFANLVQHFQDQADELRPSELIRQLLEAS 544

Query: 484 RYEDWLYETSASPKAAEMRMKNVSDLYSWIVA-DLEGDNPDQQEKTLKEVVQRLTLRDMM 542
            Y   L  +       E R +N+ +L +  V  + E D+P         ++  L    + 
Sbjct: 545 GYIAELQRSGTDED--EDRRRNLEELVNAAVQHEEENDDP--------SLIGFLGTASLA 594

Query: 543 ERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEEN-VEEERRLMYVG 601
              +  + +  V LMTLHASKGLEFP V+L+G E+G+ P   S+D+   VEEERRL YVG
Sbjct: 595 SDADNKEANQQVSLMTLHASKGLEFPVVFLVGLEQGLFPSFRSLDDPRAVEEERRLCYVG 654

Query: 602 ITRAQRELTFIVCKERRQFGELIKPS-QSRFLDELPQDDIEWEVKKKPVTQEERMAKGQA 660
           ITRAQ  L       RR +G   +P+  S FL ELP + I   V   P T+ +  A  + 
Sbjct: 655 ITRAQERLFLTHASARRLWGGGREPAIPSNFLSELPAELI---VGHSPQTRRQTQANFKP 711

Query: 661 HIANLR 666
            + + R
Sbjct: 712 PVTHER 717