Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 766 a.a., ATP-dependent helicase PcrA from Synechococcus elongatus PCC 7942

 Score =  159 bits (402), Expect = 5e-43
 Identities = 167/661 (25%), Positives = 285/661 (43%), Gaps = 80/661 (12%)

Query: 6   RQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKE 65
           +Q   + +  G  +V+A AG+GKT  I  +I  LV Q       I A TF   A  +++E
Sbjct: 7   QQQAVIDHEQGRAVVVAVAGAGKTTTIARRIGRLVHQVEVPPGRILATTFNRYARGQIRE 66

Query: 66  RVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFS---LFDD------QDQLAL 116
           ++ Q        G+ V T H L   I++ E     L A      LF D      Q +L L
Sbjct: 67  KLNQL---AVPVGVAVRTLHALAQQILKLEADPWPLAADGEMRRLFYDMQSAIRQGRLDL 123

Query: 117 LKELTEKQLDGDKDL--------LRLLLSTI--SNWKNDMLTPPQAKAMAK----GEQQL 162
             +L+  +     DL        L  L   +  S W+ + L P   + +A      E Q 
Sbjct: 124 SLDLSSHEQRQIADLNEESFLNYLGYLKGDLRFSAWQFEQL-PTHLQTVATLEVWPESQR 182

Query: 163 LFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTS 222
               C + +++  Q      FDDL++    LL ++  +R+R ++R  +L+VDEYQD N +
Sbjct: 183 WLNVCVDAFEQCRQEARLRSFDDLLVDACRLLCADMGIRERVRSRFDFLIVDEYQDINRA 242

Query: 223 QYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSR 282
           Q  ++ +L   +  L VVGDDDQ+IY WRGA+PQ ++    D   ++   L++N+RS + 
Sbjct: 243 QNLIISVLDEAQQNLMVVGDDDQTIYEWRGARPQLILDKLRDRQWVQ-YTLDRNFRSRAP 301

Query: 283 ILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEY 342
            L  AN LI +N     K L    A     +     +   +A  +  +I+ ++   +   
Sbjct: 302 QLLLANALIRHNRLRSPKQLQGTKAWQHHCEWRSFPSGSDQAAAIAEQILEYRDRGK-PL 360

Query: 343 RDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRV---------- 392
            +  IL R   Q+ LIE+ L   ++PY + G   F+ R E+K ++AYL            
Sbjct: 361 AEMVILIRTYAQTPLIEQQLIAAQLPYVIPGSQPFYLRREVKLLLAYLEFAEAERNRVQN 420

Query: 393 ----LVNPDDDNAFLRIVNTPKREI-GPATLEKLGSYANMRGKSLFTASFELGLEQHLSG 447
                     D  F    + P R +  P  L  L    +     L T   +   ++    
Sbjct: 421 GLTPATRDRYDQLFRETSSRPSRYLKRPELLSMLQEALDNPHLPLATIISQRCRDRLGRN 480

Query: 448 RGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVS 507
           R L+    +  W++     A+  +   A+  + + I    W+ ++  SP++   +   + 
Sbjct: 481 RSLQRWLDYLGWVL----GAQPSSAAAAIAKIEQLIDLRRWIIDSDISPESGAQKALIID 536

Query: 508 DLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEF 567
            L ++      GD   Q    L+E+        + E+   +D++  V L+T+  +KGLE+
Sbjct: 537 ALQAF-----AGDRAVQ--SWLQEMAA------LQEQPPLSDEASGVNLLTVFKAKGLEW 583

Query: 568 PYVYLIGAEEGILP-------------------HQTSIDEENVEEERRLMYVGITRAQRE 608
             V++   + GI P                    + ++D    EEERR++YV +TR+   
Sbjct: 584 DTVFIPDLDAGIYPFGSSRESESGPGRNSFDPLSEVALDRSLQEEERRILYVALTRSINN 643

Query: 609 L 609
           L
Sbjct: 644 L 644