Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 721 a.a., DNA-dependent helicase II (RefSeq) from Shewanella amazonensis SB2B

 Score =  399 bits (1024), Expect = e-115
 Identities = 255/670 (38%), Positives = 376/670 (56%), Gaps = 29/670 (4%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN +Q EAV       LVLAGAGSGKTRV+T++IA+L+Q       +I AVTFTNKAA E
Sbjct: 10  LNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLLQVENQSPYSILAVTFTNKAAAE 69

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M+ERV + +G    R + + TFH L   ++R  ++  GL   F + D  DQ  LLK + +
Sbjct: 70  MRERVEKIVGHNTGR-MWIGTFHGLAHRLLRTHWQDAGLPQSFQIMDSDDQQRLLKRILK 128

Query: 123 KQ-LDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
              LD  +   RL+   I+  K+  L P    A     +Q L    + +YQ        +
Sbjct: 129 SMNLDEKQYPPRLVAGYINGKKDQGLRPAHIDAGPFPMEQKLL-ELYRIYQDSCDRAGLV 187

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241
           DF +++L    L  +   +   +Q+R R++LVDE+QDTN  QY  +++L G    + +VG
Sbjct: 188 DFAEILLRAHELWLNKPHLLAHYQDRFRHILVDEFQDTNAIQYAWIRVLAGNTANVMIVG 247

Query: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301
           DDDQSIY WRGA+ +NL    +DFP  K I+LEQNYRST  IL+A+N LIANNP    K 
Sbjct: 248 DDDQSIYGWRGAQIENLHRFLQDFPGAKTIRLEQNYRSTGNILKASNELIANNPDRMGKE 307

Query: 302 LFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRD-------YAILYRGNHQ 354
           L++E  +GE + +  A NE  EA  ++  I        ++++D        AILYR N Q
Sbjct: 308 LWTEDKDGEPISLYCAFNEMDEARFIVGRI--------SDWQDKGGMLGECAILYRSNAQ 359

Query: 355 SRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIG 414
           SR++E++L    +PY++ GG  FF R EIKD M YLR++ N DDD AF R+VNTP R IG
Sbjct: 360 SRVLEEALLHKGMPYRIYGGLRFFERQEIKDAMGYLRLISNRDDDAAFERVVNTPARGIG 419

Query: 415 PATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVE 474
             TL+ L S A     +L+  S  L  E+ LSGR    ++ F + +V +  + +      
Sbjct: 420 ERTLDILRSTARKEQLTLWQTSLRLLEEKVLSGRAANAVKGFLDLIVQLRSDTDELPLYR 479

Query: 475 AVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQ 534
               +++    +  +YE     + A+ R++N+ +L   + A    + P++ E   +  + 
Sbjct: 480 VADHVIQHSGLKA-MYEAEKG-ENAQARVENLEEL---VTAARSFEMPEELEDMGE--LN 532

Query: 535 RLTLRDMMERGEENDD--SDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE-ENV 591
                  +E GE   D  +DAVQLMTLH++KGLEFP V++ G EEGI P + +++E + +
Sbjct: 533 AFLSHAALEAGEGQADAHTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSKLALEEGDRL 592

Query: 592 EEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVTQ 651
           EEERRL YVG+TRA ++L     + RR +G       SRF+ E+P + +E E++ K    
Sbjct: 593 EEERRLCYVGMTRAMQKLYITYAESRRIYGREDYARPSRFIREIPPEYVE-EIRLKAQVS 651

Query: 652 EERMAKGQAH 661
              +A   AH
Sbjct: 652 APLVANRFAH 661