Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 768 a.a., UvrD/REP helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  356 bits (913), Expect = e-102
 Identities = 235/648 (36%), Positives = 353/648 (54%), Gaps = 27/648 (4%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q  AV    GP LVL+GAG+GKTRV+T ++A ++     +   + AVTFTN+AARE
Sbjct: 28  LNPEQRAAVTTTDGPVLVLSGAGTGKTRVLTARLAQILATRPVRPWQVLAVTFTNRAARE 87

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M+ER    +G    + + + TFH LG+ ++RR    +GL++GF++ D  DQL LLK++ E
Sbjct: 88  MRERAGAMIGPMAEQ-VWLGTFHALGVRMLRRHGDLVGLRSGFTILDADDQLRLLKQILE 146

Query: 123 KQ-LDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQL--LFAHCFELYQKQMQSYN 179
            + +D  K   +  +  I  WK+  L P    A   G +         ++ YQ+++   N
Sbjct: 147 AEGIDTKKWTPQAGMGLIQRWKDKGLLPEAVPAGDGGREYAGGRAVDLYKQYQQRLAVVN 206

Query: 180 ALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTV 239
           A DF DL+L  + +   + +V   +     Y+LVDEYQDTN +QY  ++LL    G +  
Sbjct: 207 AADFGDLLLHCLTIFTKHPDVLADYSKMFHYILVDEYQDTNVAQYLWLRLLARGHGNICC 266

Query: 240 VGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQ 299
           VGDDDQSIYSWRGA+  N++    DFP   +++LE+NYRST  IL AA+ LI +N     
Sbjct: 267 VGDDDQSIYSWRGAEVGNILRFEADFPGATVVRLERNYRSTPTILAAASGLIRHNKGRLG 326

Query: 300 KALFSELAEGEKLKVILAN--NEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRL 357
           K L +   +     VI+    + + EA RV+ +I   +          A+L R   Q+R 
Sbjct: 327 KDLRAGEGDEAGDAVIVRGLWDGEEEARRVVDDIETRQRAG-DRLNGMAVLVRAGFQTRA 385

Query: 358 IEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPAT 417
            E+ L    VPY++ GG  F+ R EI+D +AYLR++  PDD  AF RI+N P+R +G A+
Sbjct: 386 FEERLILAGVPYRVVGGARFYERQEIRDAIAYLRLVAQPDDSLAFERIINLPRRGLGDAS 445

Query: 418 LEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVR 477
           L+ L   + M   SL  A+ E      L  +  + LR F + +      A+     E   
Sbjct: 446 LQTLMRASRMASISLMRAAREAIETDELRPQARKALRAFLDDMGRWRSLADAMAPDELCG 505

Query: 478 ALVRDIRY-EDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRL 536
            ++ +  Y E W  + S     A+ R++N+ +L S +          ++ ++L   ++ +
Sbjct: 506 TVLDESGYLEMWRKDKSPD---AQGRVENLKELVSAL----------KEFESLGAFLEHV 552

Query: 537 TLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE---ENVEE 593
           +L   +   E     DAV LMTLHA+KGLEF  V+L G EE I PH+ ++DE   E +EE
Sbjct: 553 SL---VMDNEARATEDAVTLMTLHAAKGLEFDTVFLPGWEEEIFPHRRALDENGAEALEE 609

Query: 594 ERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIE 641
           ERRL YVG+TRA++         RR + E      SRF+DELP + +E
Sbjct: 610 ERRLAYVGLTRARKRAIISFVANRRVYNEWRACLPSRFIDELPPEVVE 657