Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 848 a.a., UvrD-helicase domain-containing protein from Rhodopseudomonas palustris CGA009

 Score =  375 bits (964), Expect = e-108
 Identities = 267/701 (38%), Positives = 370/701 (52%), Gaps = 88/701 (12%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q EAV+ + GP LVLAGAG+GKTRV+T +IA+++     +   I +VTFTNKAARE
Sbjct: 38  LNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILSTGRARPAEILSVTFTNKAARE 97

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKEL-T 121
           MK R+ Q LG+       + TFH++G  I+R   + + L + F++ D  DQ+ LLK+L  
Sbjct: 98  MKLRLGQMLGQAVEGMPWLGTFHSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQLLA 157

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKA-----MAKGEQQLLFAHCFELYQKQMQ 176
              +D  +   R+L   I  WKN  LTP Q  A        G    L+A     YQ++++
Sbjct: 158 ADNIDDKRWPARMLAGLIDGWKNRGLTPSQVPAGEAAMFGNGRGGKLYAQ----YQERLK 213

Query: 177 SYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLV----- 231
             NA DF DL+L  + L R + +V + +QNR +++LVDEYQDTN +QY  ++LL      
Sbjct: 214 ILNAADFGDLLLENIRLFREHPDVLRSYQNRFKFILVDEYQDTNVAQYLWLRLLSQTPSS 273

Query: 232 ----------------GERG--------------------------RLTVVGDDDQSIYS 249
                           G  G                           +  VGDDDQSIY 
Sbjct: 274 SSLPGSTRQSISSQEDGSPGLAASRRPGDDVETSGNVVASTSAPPKNICCVGDDDQSIYG 333

Query: 250 WRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKALFSELAEG 309
           WRGA+  N++    DFP  K+I+LE+NYRST  IL AA+ LIA+N     K L +E  +G
Sbjct: 334 WRGAEVDNILRFDHDFPGAKVIRLERNYRSTGHILAAASHLIAHNEGRLGKTLRTEDVDG 393

Query: 310 EKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPY 369
           E + V  A + + EA R I E I           + AIL R + Q R  E       +PY
Sbjct: 394 EMVTVTGAWDSEEEA-RAIGEEIEQLQRQGHALNEIAILVRASFQMREFEDRFVTLGLPY 452

Query: 370 KLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKLGSYANMRG 429
           ++ GG  F+ RAEI+D +AYLRV+ +P DD AF RIVN PKR +G AT++ L  +A  R 
Sbjct: 453 RVIGGPRFYERAEIRDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQMLHDHARKRR 512

Query: 430 KSLFTA------SFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDI 483
             LF A      + EL  +   S RGL  +  F  W V   D        E V  L    
Sbjct: 513 IPLFDAARMVIDTDELKPKARGSLRGL--IESFERWQVQ-RDAVAHTELAEIV--LDESG 567

Query: 484 RYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMME 543
             E W  + SA    A  R++N+ +L    V  +E      + + L+  ++ ++L  +M+
Sbjct: 568 YTEMWQKDRSAD---AAGRLENLKEL----VRSME------EFENLQGFLEHISL--VMD 612

Query: 544 RGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEE---NVEEERRLMYV 600
           R E   D DAV +MTLH++KGLEF  V+L G EEG+ PHQ ++DE+    +EEERRL +V
Sbjct: 613 R-EGGADEDAVSVMTLHSAKGLEFETVFLPGWEEGLFPHQRALDEQGRAGLEEERRLAHV 671

Query: 601 GITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIE 641
           GITRA++         RR  G       SRFLDELP  ++E
Sbjct: 672 GITRARKRAKLYFATNRRIHGTWNTTIPSRFLDELPAANVE 712