Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 687 a.a., ATP-dependent helicase from Rhodopseudomonas palustris CGA009

 Score =  213 bits (543), Expect = 2e-59
 Identities = 189/640 (29%), Positives = 306/640 (47%), Gaps = 58/640 (9%)

Query: 3   LNPRQDEAVKYVSGPC-----LVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTN 57
           LNP Q  AV++ +GP      LV+AGAGSGKT  + +++A+LV   G     I  +TF+ 
Sbjct: 11  LNPEQRCAVEHGAGPAPCPPLLVIAGAGSGKTNTLAHRVAHLVVG-GADPYRILLMTFSR 69

Query: 58  KAAREMKERVAQTLGK-------GESRGL-MVSTFHTLGLNIIRREFKALGLKAGFSLFD 109
           +AA EM  RV +   K         S GL    TFH +G  ++R   + +GL  GF++ D
Sbjct: 70  RAAAEMTRRVERIARKVLGDRASALSGGLHWAGTFHGIGARLLRDYAERIGLDPGFTIHD 129

Query: 110 DQDQLALLK----ELTEKQLDGDKDLLRLLLSTISNWKN-----DMLTPPQAKAMAKGEQ 160
            +D   L+     +L   + D         LS  S   N     D++        A    
Sbjct: 130 REDSADLMNLVRHDLGFSKADSRFPAKATCLSIYSRCVNAGQPLDVVLGANYPWCAGWAA 189

Query: 161 QLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSN---EEVRQRWQNRIRYLLVDEYQ 217
           +L     F  Y +  Q +N LD+DDL+L    ++      EE+  R+     ++LVDEYQ
Sbjct: 190 EL--KQLFAAYVEAKQRHNVLDYDDLLLYWAQVMEEPAFAEEIGSRFD----HVLVDEYQ 243

Query: 218 DTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDF-PSLKLIKLEQN 276
           DTN  Q  ++  L      LTVVGDD Q+IYS+R A  +N++   + F P  +++ L++N
Sbjct: 244 DTNALQARVLLALKPNGVGLTVVGDDAQAIYSFRAATVRNILDFPKAFDPPARVVTLDRN 303

Query: 277 YRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKF 336
           YRST  IL AAN +I      + K L+++ A+G +  ++   +E  +A R I E +    
Sbjct: 304 YRSTQAILSAANGVIDLARERFTKNLWTDRADGARPLLVSVRDETDQA-RYIVERVLDAR 362

Query: 337 LNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNP 396
                 +  A+L+R +  S  +E  LT+  +P+   GG  F   A +KD++A LR + NP
Sbjct: 363 EGGVTLKQQAVLFRTSSHSAPLELELTRRNIPFVKFGGLKFLDAAHVKDMLALLRFVQNP 422

Query: 397 DDDNAFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSG--RGLENLR 454
            D  A  R++    + +GPA+ +K          ++  A+  LG    L    R   + R
Sbjct: 423 RDRVAGFRVM-LLMQGVGPASAQKALD-------TMTAAADPLGALTALPAPPRAGADWR 474

Query: 455 RFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIV 514
            F    V    + + G   E  RAL+    + D ++E + + KA  +++  ++  Y    
Sbjct: 475 GFVA-AVQELRSGDAGWPAEIERALIWYAPHLDRIHEDAETRKADLVQLAQIASGY---- 529

Query: 515 ADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIG 574
                     +E+ L E+          + G    D D + L T+H++KG E+  V+++ 
Sbjct: 530 --------PSRERFLTELTLDPPDATSDQAGVPTLDDDYLILSTIHSAKGQEWKQVFVLN 581

Query: 575 AEEGILPHQTSI-DEENVEEERRLMYVGITRAQRELTFIV 613
             +G +P          +EEERRL+YV +TRA+ +L  +V
Sbjct: 582 VVDGCMPSDLGTGTSAEIEEERRLLYVAMTRAKDDLHLVV 621