Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., DNA helicase II UvrD from Phaeobacter inhibens DSM 17395

 Score =  402 bits (1032), Expect = e-116
 Identities = 258/662 (38%), Positives = 375/662 (56%), Gaps = 51/662 (7%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q  AV+ + GP L+LAGAG+GKT+ +T +I +L+     K   I AVTFTNKAARE
Sbjct: 31  LNPAQRAAVECLEGPVLMLAGAGTGKTKALTARIVHLLTTGTAKPNEILAVTFTNKAARE 90

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           MKERVA  LG+       + TFH++ + ++RR  + +GLK+ F++ D  DQ+ LLK+L +
Sbjct: 91  MKERVAGMLGQAVEGMPWLGTFHSICVKLLRRHAELVGLKSNFTILDADDQIRLLKQLIK 150

Query: 123 KQ-LDGDKDLLRLLLSTISNWKNDMLTP---PQAKAMAKGEQQLLFAHCFELYQKQMQSY 178
            + +D  +   R+L   I +WKN  LTP   P + A A   + + F   +  YQ +++  
Sbjct: 151 AEGIDDKRWPARMLAGVIDDWKNRALTPSKVPVSDASAYNHRGVDF---YAQYQARLKDL 207

Query: 179 NALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLT 238
           NA+DF DL+L  V + + N +V +++Q   R+++VDEYQDTN +QY  ++LL G    + 
Sbjct: 208 NAVDFGDLLLHMVTIFQDNPDVLEQYQRWFRFIMVDEYQDTNVAQYLWLRLLAGAHKNIC 267

Query: 239 VVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVY 298
            VGDDDQSIY WRGA+  N++   +DFP   +++LEQNYRST  IL AA+ +I  N    
Sbjct: 268 CVGDDDQSIYGWRGAEVGNILRFEKDFPGANVVRLEQNYRSTEHILSAASGVIRGNSGRL 327

Query: 299 QKALFSELAEGEKLKVILANNEDHEAERVIAEIIA----HKFLNRTEYRDYAILYRGNHQ 354
            K L++E   GEK+++I   + + EA  +  EI A     + L   +  + AIL R +HQ
Sbjct: 328 GKELWTEARGGEKVRLIGHWDGEEEARWIGEEIEAMQRGTRGLAPVDLNNMAILVRASHQ 387

Query: 355 SRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIG 414
            R  E       +PY++ GG  F+ R EI+D MAY R +++PDDD AF RIVNTPKR +G
Sbjct: 388 MRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRQVISPDDDLAFERIVNTPKRGLG 447

Query: 415 PATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVE 474
               + + + A   G SL                 +E  R      +A+     +G   +
Sbjct: 448 DKAQQTIQTMARSNGVSL-----------------VEGAR------LAVESGQIKGKGGK 484

Query: 475 AVRALVRDIRYEDWLY--ETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEV 532
           A+  LV D+     L     +   + AE+ +        W  AD   D+P + E  LKE+
Sbjct: 485 ALHQLVTDLARWGRLAGDADTTHMELAEIILDESGYTTMW-QADKNPDSPGRLE-NLKEL 542

Query: 533 VQRL----TLRDMMERGE---ENDDSDAVQ---LMTLHASKGLEFPYVYLIGAEEGILPH 582
           V+ L     L+  +E      +ND  DA Q   +MTLHA+KGLEFP V+L G E+G+ P 
Sbjct: 543 VKALEAFENLQGFLEHVSLIMDNDKQDAAQKVSIMTLHAAKGLEFPAVFLPGWEDGLFPS 602

Query: 583 QTSIDE---ENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDD 639
           Q S+DE   + +EEERRL YVGITRA+   T      RR FG+      SRF+DELP+++
Sbjct: 603 QRSMDESGLKGLEEERRLAYVGITRAEEICTISFAGNRRVFGQWQSQLPSRFIDELPEEN 662

Query: 640 IE 641
           +E
Sbjct: 663 VE 664