Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 1138 a.a., putative UvrD/REP helicase from Phaeobacter inhibens DSM 17395

 Score =  194 bits (492), Expect = 3e-53
 Identities = 185/692 (26%), Positives = 304/692 (43%), Gaps = 82/692 (11%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN  Q  A ++     L+ AG G+GKT+ +  +++ L  +      +I  +TF+NKAA E
Sbjct: 198 LNEEQRHAAEHDGNALLLKAGPGTGKTQTLVGRLSVLKDR-SVDPESILLLTFSNKAAGE 256

Query: 63  MKERVAQTLGKGESRG-LMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-- 119
           M +R    L   E+ G   + TFH+ GL+++RR     GL +   L D  + +ALL++  
Sbjct: 257 MTDRAM--LAWPEAAGSAWIGTFHSFGLDLLRRFHDRAGLPSDPRLIDATEAIALLEDEF 314

Query: 120 ----LTE-KQLDGDKDLLRLLLSTISNWKNDM--------LTPPQAKAMAKGEQQLLFAH 166
               LT    L    D LR +LS IS  K+++        L    A A   GE ++    
Sbjct: 315 PRLRLTHFNDLWDPTDNLRSILSAISRAKDEVIDQHRYRELAQQMADAAETGEDKIAAEK 374

Query: 167 CFE------LYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTN 220
           C E      LY++      A+DF DL+  P  L+ S+  VR   Q R  ++LVDEYQD N
Sbjct: 375 CLEIASVYDLYEQLKAERGAVDFGDLVARPTALIESDRAVRTELQGRYDHVLVDEYQDVN 434

Query: 221 TSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLL-GEDFPSLKLIKLEQNYRS 279
            +   L++ L  +   L VVGD  QSIY +RGA   N+     EDFP  K ++L  NYRS
Sbjct: 435 RASVRLLRALKPDGKNLWVVGDAKQSIYRFRGASSYNIDRFETEDFPGGKSLQLSMNYRS 494

Query: 280 TSRILRAANILIANNPHV--YQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFL 337
           +  I    +           +Q   F     G     +   ++DHE E + A +IA    
Sbjct: 495 SQEICDTFSAFATTRMAASGFQANAFKG-KSGVSPSFVSVESKDHEIEEIAARVIA-ACD 552

Query: 338 NRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPD 397
           + T +RD A++ +GN +   +   L    +P    G    F R EIK+ ++ L ++++P 
Sbjct: 553 DTTSFRDQAVICKGNARLAEVAAGLEACGIPVLFLG--PLFDRPEIKEALSLLSLVIDPR 610

Query: 398 DDN----AFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENL 453
                  A ++    P  ++  A    + +    +   L      L +   +S RG  + 
Sbjct: 611 AMGLTCVASMQPFQMPIEDVAVA----IETVRASKKPQLLDWRTVLAMVPGMSERGRASA 666

Query: 454 RRFTEWLVAIADNAERGNTVEAV----RALVRDIRYEDWLYETSASPKAAEMRMKNVSDL 509
           +   +    I   A     +  +         DI  +   +E +A+P  A  + +N    
Sbjct: 667 QALIDAFEGIEPTATAWQIITKIYLDRTRFAADIATQ--AHEGNANPALALWQFQN---- 720

Query: 510 YSWIVADLEGDNPDQQEKTLKEVVQRLTL----RDMMERGEENDDSDAVQLMTLHASKGL 565
               +     +      + L E ++RL +    RD+ +        DAV+LMT+H SKGL
Sbjct: 721 ---FLRSALPEKSGYPVRDLLEHIRRLVILSDERDLRDLPAAAQSIDAVRLMTIHGSKGL 777

Query: 566 EFPYVYLIGAEEGILPHQT----------------------SIDEENVEEERRLMYVGIT 603
           EF  ++L     G +P                         ++D  + EE+R L +V ++
Sbjct: 778 EFKVLHLPSLTSGSIPRSAKQSRGLPPPDGMIEGPVFRGSDAVDAGHDEEQRCLFFVALS 837

Query: 604 RAQRELTFIVCKERRQFGELIKPSQSRFLDEL 635
           RA+  L F+    ++  G   + S+S F+D++
Sbjct: 838 RAEDSL-FLYAPNKKSNGH--RQSRSSFVDDI 866