Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 767 a.a., ATP-dependent DNA helicase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  404 bits (1037), Expect = e-116
 Identities = 238/652 (36%), Positives = 385/652 (59%), Gaps = 19/652 (2%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP+Q  AV+   GP +++AGAGSGKTRVIT ++A+L+Q  G    NI  +TFTNKA+++
Sbjct: 7   LNPQQRAAVENTKGPVMIVAGAGSGKTRVITFRVAHLIQT-GTDPFNILVLTFTNKASKD 65

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKE-LT 121
           M+ER+++ +G  E++ + + TFH++   I+R E + +G  + F+++D  D  ++++  L 
Sbjct: 66  MRERISKVVG-AEAKNIWMGTFHSVFAKILRVEAEKIGYPSNFTIYDTDDSKSVIRAILK 124

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLT------PPQAKAMAKGEQQLLFAHCFELYQKQM 175
           E QLD        + + IS+ KN++++        Q +A     ++ L    +E Y K+ 
Sbjct: 125 EMQLDDKLYAANFVFNRISSAKNNLISWGEYQANDQIQAEDIQNKRPLIGQIYETYAKRC 184

Query: 176 QSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERG 235
               A+DFDDL+    +LL+ + +V  ++Q + RYL+VDEYQDTN SQY +VK L     
Sbjct: 185 FRAGAMDFDDLLFKTNILLKEHPDVLNKYQQKFRYLMVDEYQDTNFSQYTIVKKLAAAYQ 244

Query: 236 RLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNP 295
            + VVGDD QSIY++RGA  QN++    D+P LK+ KLEQNYRST  I+ AA+ +IANN 
Sbjct: 245 NICVVGDDAQSIYAFRGANIQNILNFERDYPDLKVYKLEQNYRSTQNIVDAASSIIANNK 304

Query: 296 HVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQS 355
           +  +K +FS+   G+++KV  A  ++ E + V   II  +     ++ D+AILYR N QS
Sbjct: 305 NQLEKNVFSDNEPGDRIKVSRAFTDNEEGKLVAEAIIQERSTKGYQHNDFAILYRTNAQS 364

Query: 356 RLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGP 415
           R +E+ L +  +PY++ GG SF+ R EIKD++AY R+  NP D+ A  R++N PKR IG 
Sbjct: 365 RAMEEGLRKLNIPYRIYGGQSFYQRKEIKDLIAYFRLTFNPKDEEAIKRVINYPKRGIGD 424

Query: 416 ATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEA 475
            +++K+   A+  GK+++         +++ GR    L  F   + +    A++ +  + 
Sbjct: 425 TSIDKIIVAADQHGKTMWDVI--SNAHEYVDGRLANQLNDFAMMVQSFQAEAKKLDAYDT 482

Query: 476 VRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQR 535
              + +       LY   +    A  R +N+ +L + I    E +  D +EK L   +Q 
Sbjct: 483 ALFIAQHAGILKELYTDDSVEGRA--RYENIQELLNGIKEFAERE--DIEEKGLDIFMQD 538

Query: 536 LTLRDMMER-GEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSI-DEENVEE 593
           + L    ++ G++N   D V LMT+H++KGLEF  V+++G EE + P Q S+ +  ++EE
Sbjct: 539 VALLTNDDKDGDKN--KDTVSLMTIHSAKGLEFKNVFIVGLEENLFPSQMSLTNRTDLEE 596

Query: 594 ERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVK 645
           ERRL YV ITRA+ +LT      R ++G L     SRF++E+    +E +VK
Sbjct: 597 ERRLFYVAITRAEVKLTLTYATSRYRWGTLTNCEPSRFINEISPKFLELDVK 648