Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., DNA-dependent helicase II (RefSeq) from Shewanella loihica PV-4

 Score =  388 bits (996), Expect = e-112
 Identities = 248/647 (38%), Positives = 362/647 (55%), Gaps = 22/647 (3%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN +Q EAV       LVLAGAGSGKTRV+T++IA+L+Q       +I AVTFTNKAA E
Sbjct: 10  LNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAE 69

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M+ERV +  G    R + + TFH L   ++R  ++   L   F + D  DQL L+K + +
Sbjct: 70  MRERVEKVSGSNMGR-MWIGTFHGLAHRLLRTHYQDANLPQSFQILDSDDQLRLIKRILK 128

Query: 123 K-QLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
              LD  +   R     I+  K+  L P    A     +Q L    +++YQ+       +
Sbjct: 129 SLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLK-IYQVYQESCDRAGLV 187

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241
           DF +++L    L  +   + + +Q R + +LVDE+QDTN  QY  +++L G    + +VG
Sbjct: 188 DFAEILLRAHELWLNKPHILEHYQERFKNILVDEFQDTNAIQYAWIRVLAGSTANVMIVG 247

Query: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301
           DDDQSIY WRGA+ +NL    +DFP+ + I+LEQNYRS+  IL A+N LIANNP    K 
Sbjct: 248 DDDQSIYGWRGAQVENLHRFLQDFPAAQTIRLEQNYRSSGNILNASNELIANNPDRLGKK 307

Query: 302 LFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKS 361
           L++E  +GEK+ +  A NE  EA  ++  I   + +      D AILYR N QSR++E++
Sbjct: 308 LWTEDKDGEKIGLYCAFNEMDEARFIVGRITDWQDMG-GNLSDCAILYRSNAQSRVLEEA 366

Query: 362 LTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKL 421
           L    + Y++ GG  FF R EIKD M YLR++ N +DD AF RI+NTP R IG  TL+ L
Sbjct: 367 LLHKGMAYRIYGGLRFFERQEIKDAMGYLRLISNKNDDAAFERIINTPTRGIGDRTLDIL 426

Query: 422 GSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAI----ADNAERGNTVEAVR 477
            S A  +  +L+     L  E+ LSGR    +R F + +V +    A+ +    T   ++
Sbjct: 427 RSTARQQELTLWQTCLRLLDEKVLSGRAANAVRSFMDLIVTLQQETAEQSLHRMTDHVIQ 486

Query: 478 ALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLT 537
           A      YE      +   + A  R++N+ +L   + A      P+  E   +  +    
Sbjct: 487 ASGLKAMYE------AEKGEKARARVENLEEL---VTAARTFVMPEDLEDMGE--LNAFL 535

Query: 538 LRDMMERGEENDD--SDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE-ENVEEE 594
               +E GE   D  +DAVQLMTLH++KGLEFP V++ G EEGI P Q ++DE + ++EE
Sbjct: 536 SHAALEAGEGQADAFTDAVQLMTLHSAKGLEFPMVFMAGVEEGIFPSQMAMDEGDRLDEE 595

Query: 595 RRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIE 641
           RRL YVG+TRA ++L     + RR +G       SRF+ E+P D ++
Sbjct: 596 RRLCYVGMTRAMKQLYITYAESRRIYGRENYARPSRFIKEIPGDYVQ 642