Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., Probable ATP-dependent DNA helicase II UvrD2 from Mycobacterium tuberculosis H37Rv

 Score =  189 bits (481), Expect = 3e-52
 Identities = 145/453 (32%), Positives = 222/453 (49%), Gaps = 19/453 (4%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           L+ +Q EAV    GP  VLAGAG+GKTR IT++IA LV      A  + AVTFT +AA E
Sbjct: 12  LDDQQREAVLAPRGPVCVLAGAGTGKTRTITHRIASLVASGHVAAGQVLAVTFTQRAAGE 71

Query: 63  MKERV-----AQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALL 117
           M+ R+     A   G G    +   TFH      +R  +  +    G+ L D +  + + 
Sbjct: 72  MRSRLRALDAAARTGSGVG-AVQALTFHAAAYRQLRYFWSRVIADTGWQLLDSKFAV-VA 129

Query: 118 KELTEKQLDGDKDLLRLLLSTISNWKNDMLTPPQ---AKAMAKGEQQLLFAHCFELYQK- 173
           +  +  +L    D +R L   I   K  ++ P +   A A A+ +  L  A    +Y + 
Sbjct: 130 RAASRTRLHASTDDVRDLAGEIEWAKASLIGPEEYVTAVAAARRDPPLDAAQIAAVYSEY 189

Query: 174 -----QMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVK 228
                +      LDFDDL+L     + ++  V + +Q+R R  +VDEYQD    Q  ++ 
Sbjct: 190 EALKARGDGVTLLDFDDLLLHTAAAIENDAAVAEEFQDRYRCFVVDEYQDVTPLQQRVLS 249

Query: 229 LLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAAN 288
             +G+R  LTVVGD +Q+IYS+ GA P+ L+     FP   +++LE++YRST +++  AN
Sbjct: 250 AWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDAAVVRLERDYRSTPQVVSLAN 309

Query: 289 --ILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYA 346
             I  A       K   S   E   +     ++++      +A  IA    + T   + A
Sbjct: 310 RVIAAARGRVAGSKLRLSGQREPGPVPSFHEHSDEPAEAATVAASIARLIASGTPPSEVA 369

Query: 347 ILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIV 406
           ILYR N QS + E++LTQ  + Y++ GG  FF R EIK  +  L+ +   D D A   +V
Sbjct: 370 ILYRVNAQSEVYEEALTQAGIAYQVRGGEGFFNRQEIKQALLALQRVSERDTDAALSDVV 429

Query: 407 NTPKREIGPATLEKLGSYANMRGKSLFTASFEL 439
                 +G      +G+ A  R ++L TA  EL
Sbjct: 430 RAVLAPLGLTAQPPVGTRARERWEAL-TALAEL 461



 Score = 60.5 bits (145), Expect = 3e-13
 Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 554 VQLMTLHASKGLEFPYVYLIGAEEGILPHQTSI----DEENVEEERRLMYVGITRAQREL 609
           V L +LHA+KGLE+  V+L+G  +G LP   ++    + E VEEERRL+YVGITRA+  L
Sbjct: 496 VTLASLHAAKGLEWDAVFLVGLADGTLPISHALAHGPNSEPVEEERRLLYVGITRARVHL 555

Query: 610 TFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVTQEERMAKGQA 660
                  R   G   +   SRFL     + I  + +  PV    R  +G A
Sbjct: 556 ALSWALSRSPGGRQSR-KPSRFL-----NGIAPQTRADPVPGTSRRNRGAA 600