Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score =  385 bits (988), Expect = e-111
 Identities = 261/670 (38%), Positives = 377/670 (56%), Gaps = 40/670 (5%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP+Q +AV +   P L++AGAGSGKT V+T +IAYL+   G     I A+TFTNKAA E
Sbjct: 23  LNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAE 82

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKAL-GLKAGFSLFDDQDQLALLKEL- 120
           M+ERV   +G+ ++R + VSTFH+  + I+R +   + GL + FS++D  D   LL+ + 
Sbjct: 83  MRERVVGLVGE-KARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVG 141

Query: 121 TEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLL---FAHCFELYQKQMQS 177
            +  LD  +   RLL + ISN KN+++ P QA A    +   L    A  ++ YQ+++++
Sbjct: 142 RDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQRRLRA 201

Query: 178 YNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGER--- 234
            NALDFDDLI   V +L++  ++ Q ++ R R++LVDEYQDTN +QY LV+ LVG     
Sbjct: 202 ANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSND 261

Query: 235 ----GRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANIL 290
               G L VVGD DQSIY++RGA  +N+     D+P  + I LEQNYRST  IL AAN +
Sbjct: 262 GIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAANSV 321

Query: 291 IANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYR 350
           IA N    +K L+++   GE +   +A+NE  EA  V  EI A    +   Y D A+ YR
Sbjct: 322 IARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAVFYR 381

Query: 351 GNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPK 410
            N+ SR +E+ L +  +PYK+ GG  F+ R EI+DI+AYLRVL NP D  +  RI+NTP+
Sbjct: 382 TNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTPR 441

Query: 411 REIGPATLEKLGSYANMRGKSLFTA--SFELGLEQHLSGRGLENLRRFTEWLVAIADNAE 468
           R IG      +  YA   G     A  +   G    L+ R  + +  F E    +    +
Sbjct: 442 RGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRGRLD 501

Query: 469 RGNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGD-------N 521
             +  E V A++    Y   L E S  P+    R+ N+++L S +  +   D        
Sbjct: 502 -DDLGELVEAVLERTGYRREL-EASTDPQEL-ARLDNLNELVS-VAHEFSTDRENAAALG 557

Query: 522 PDQQEKTLKEVVQRLTLRDMMERGEENDDSD--------AVQLMTLHASKGLEFPYVYLI 573
           PD +     +V     L D +ER     D+D         V LMTLH +KGLEFP V++ 
Sbjct: 558 PDDE-----DVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVT 612

Query: 574 GAEEGILPHQTSIDE-ENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFL 632
           G E+G+ PH  ++D    + EERRL YVGITRA++ L       R  +G+ +   +SRFL
Sbjct: 613 GWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFL 672

Query: 633 DELPQDDIEW 642
            E+PQ+ I+W
Sbjct: 673 REIPQELIDW 682