Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 789 a.a., UvrD/REP helicase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  259 bits (662), Expect = 3e-73
 Identities = 205/647 (31%), Positives = 319/647 (49%), Gaps = 85/647 (13%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +LNP Q +A   + GP LV+AGAGSGKTR I  ++A LV+Q G  A  I  +TFT K+AR
Sbjct: 7   ELNPAQYQAATTLEGPLLVIAGAGSGKTRTIVYRLANLVEQ-GVPASAILLLTFTRKSAR 65

Query: 62  EMKERVAQTL----------GKGESRGLMVSTFHTLGLNIIRREFKALGLKAG-FSLFDD 110
           EM  R  + L          G     G+   TFH    +++R +F+  G +AG  ++ D 
Sbjct: 66  EMLHRAGRLLEHSATAAVHGGVHGVTGVQGGTFHAFAYSVLR-QFRPSGYEAGDLTVMDG 124

Query: 111 QDQLALLKELTEKQL--DGDKDLLRL--LLSTISNWKNDMLTPPQAKAMAKGEQQLLFAH 166
            D +  ++   + Q    GD+   R   ++  IS  +N  L   +   + + E   L  H
Sbjct: 125 ADIVDAVRHCKDNQGIGKGDRSFPRTQNIVGLISKSRNKELDIDE---VIRREAFHLLVH 181

Query: 167 CFEL------YQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTN 220
              +      Y    + +  LD+DDL+     LLR   +V    + R RY++VDEYQDTN
Sbjct: 182 AEGIGRIAAAYHAYRREHGLLDYDDLLFELERLLRERADVLDWCRARFRYIMVDEYQDTN 241

Query: 221 TSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRST 280
             Q  LV LL GE G +  VGDD QSIY++RGA  +N++   + FP+ ++IKLE+NYRS 
Sbjct: 242 LVQARLVHLLAGEGGNVMAVGDDAQSIYAFRGADVRNILDFPKLFPAAQIIKLEENYRSV 301

Query: 281 SRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRT 340
             +L   N ++A  P  Y+K LF+    G++ +V+   ++  +A  V++ I+  +FL   
Sbjct: 302 QPVLDLTNAILAEAPQAYRKKLFAAREGGDRPQVVRPLSDLTQASLVVSRIV--EFLRSY 359

Query: 341 EYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDN 400
              D A+L+R  +QS  +E  L +  V ++  GG  +   A +KD+++Y R+++NP D  
Sbjct: 360 PPHDIAVLFRAGYQSYHVEVQLNKLGVKFRKYGGLRYSEAAHVKDVLSYARLVLNPLDLP 419

Query: 401 AFLRIVNTPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWL 460
           AF RI    K  +GP T  KL                                       
Sbjct: 420 AFQRIAAMSK-GVGPKTTLKL--------------------------------------- 439

Query: 461 VAIADNAERGNTVEAVRALVR--DIRYE-DWLYETSASPKAAEMRMKNVSDLYSWIVADL 517
               D A +GN     RA +R  ++R + D L      P      ++ V + Y   +   
Sbjct: 440 ---YDVARQGNPEATSRACLRYPELRADLDLLDGLRKRPHTPTSLLEEVMEHYKPRMEAA 496

Query: 518 EGDNPDQQEKTLKEVVQ-RLTLRD---------MMERGEENDDSDAVQLMTLHASKGLEF 567
             D+  ++++ L++++Q   + RD         + + GEE ++ D+V L T+H++KGLE+
Sbjct: 497 FPDDWPRRQQGLEQLLQIAASYRDLDLFISDLSLEDPGEEEENRDSVVLSTIHSAKGLEW 556

Query: 568 PYVYLIGAEEGILPHQTSIDE-ENVEEERRLMYVGITRAQRELTFIV 613
             V LI   E   P + +I   E+ EEERRLMYV  TRA+  L   V
Sbjct: 557 GAVLLIDLVEERFPSRHAIARAEDFEEERRLMYVACTRARDHLCLFV 603