Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 1244 a.a., UvrD/REP helicase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  110 bits (274), Expect = 5e-28
 Identities = 94/292 (32%), Positives = 138/292 (47%), Gaps = 27/292 (9%)

Query: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60
           ++ NP Q  A+     P LVLAG G+GKTR +  ++ +LV+  G  AR I AVTFT +AA
Sbjct: 558 VRFNPAQRRALAAGPQPVLVLAGPGTGKTRTLVGRVLHLVET-GIDARRILAVTFTRRAA 616

Query: 61  REMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKEL 120
            EM ER+A  LG+ ++      T H L      R      +     L  ++   A  +  
Sbjct: 617 AEMDERLATALGE-DAPLPRTDTLHALAFEYWHRATPTPPV-----LLSEE---AARRVF 667

Query: 121 TEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNA 180
            E   D     LR     I   +  M +          E   L A     Y +Q  ++N 
Sbjct: 668 AEANPDEPAQRLREAWEAIGVCREKMRS-------CLAEHAPLLAR----YTEQKAAWNL 716

Query: 181 LDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGR-LTV 239
            D+ DL+   +  +++N      + +  R++LVDE QD +  Q  LV+ L    G     
Sbjct: 717 ADYTDLLEFWLDQMQNNI-----YASPWRHVLVDEIQDLSPLQLTLVRALAPRGGAGFFG 771

Query: 240 VGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILI 291
           +GD DQSIY +RGA       L E +P L ++ LE+NYRS++RIL  A  L+
Sbjct: 772 IGDPDQSIYGFRGAHGDVAAFLREAWPDLSVVALEENYRSSARILDFAGGLM 823



 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 16/119 (13%)

Query: 551  SDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQ--------------TSIDEENVEEERR 596
            S+ VQ+M+LHA+KGLEF  V+L   E+GI+P                +     +++EERR
Sbjct: 1122 SEKVQIMSLHAAKGLEFRAVFLPALEDGIMPFAGAGTLTGKPQRDGASPDTRTDMDEERR 1181

Query: 597  LMYVGITRAQRELTFIVCKERRQ-FGELIKPSQSRFLDELPQDDIEWEVKKKPVTQEER 654
            L+YVG+TRA   L F+ C  RRQ +G  ++   SRFLD++P + +   +  +   ++ER
Sbjct: 1182 LLYVGMTRASEGL-FLSCAARRQLYGRELRLKPSRFLDDVPLEGLRRSMLVQHQKRKER 1239