Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., ATP-dependent DNA helicase Rep (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  943 bits (2438), Expect = 0.0
 Identities = 469/671 (69%), Positives = 556/671 (82%), Gaps = 1/671 (0%)

Query: 1   MKLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAA 60
           MKLNP Q++AV YVSGPCLVLAGAGSGKTRVI NKIAYLVQ+CGY ARNIAAVTFTNKAA
Sbjct: 1   MKLNPAQNDAVHYVSGPCLVLAGAGSGKTRVIINKIAYLVQKCGYNARNIAAVTFTNKAA 60

Query: 61  REMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKEL 120
           REMKERVAQ++G+ E+RGL +STFHTLGL I++RE K LGLK GFSLFDDQD LALLKEL
Sbjct: 61  REMKERVAQSMGRKEARGLWISTFHTLGLEIVKREHKVLGLKPGFSLFDDQDTLALLKEL 120

Query: 121 TEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNA 180
           T+K+L  DKDLL+ L   ISNWK  ++ P QA+ +AK EQQ LFA  ++ Y + M++YNA
Sbjct: 121 TQKELQEDKDLLKALAGAISNWKGGLIIPDQARKLAKDEQQQLFALLYQRYAQHMKAYNA 180

Query: 181 LDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVV 240
           LDFDDLILLP LLLR +EEVR RWQ +I+YLLVDEYQDTNTSQYE+VKLLVGER R TVV
Sbjct: 181 LDFDDLILLPTLLLRHHEEVRTRWQTKIQYLLVDEYQDTNTSQYEMVKLLVGERARFTVV 240

Query: 241 GDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQK 300
           GDDDQSIYSWRGAKPQNLVLLG+DFP LKLIKLEQNYRS+ RILRAANILIANNPHVY K
Sbjct: 241 GDDDQSIYSWRGAKPQNLVLLGKDFPKLKLIKLEQNYRSSQRILRAANILIANNPHVYDK 300

Query: 301 ALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEK 360
           +LFSELA GE ++V+ A NE+ EAERV+AEI+ HKF+ RT++ DYAILYRGNHQSRL+E+
Sbjct: 301 SLFSELAYGEPMRVLFAANEEQEAERVVAEIVRHKFVGRTQFGDYAILYRGNHQSRLLER 360

Query: 361 SLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEK 420
           +L  NR+PYKLSGGTSFF+RAEIKDIM YL+++VNPDDDNAFLR+VN PKR IGP+TLE+
Sbjct: 361 ALMTNRIPYKLSGGTSFFSRAEIKDIMGYLKLVVNPDDDNAFLRVVNLPKRGIGPSTLER 420

Query: 421 LGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALV 480
           LG++AN +  S+F A F   L  HL    +  L +F  ++V   ++A+RG  VEAV+ L+
Sbjct: 421 LGNFANEKHISMFEAIFAPELNHHLPPNAMSALYQFGRFIVDTGEHADRGEPVEAVKQLI 480

Query: 481 RDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRD 540
           R I YED+LYETS S KAAEMRMKN+S+LY W+   L GD   ++  TL EVV RLTLRD
Sbjct: 481 RKINYEDYLYETSTSAKAAEMRMKNISELYRWVTEMLSGDEL-EEPMTLPEVVNRLTLRD 539

Query: 541 MMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEENVEEERRLMYV 600
           MMER  E++  D VQLMTLHASKGLEFP+V+++G EE ILPHQTSIDE+NV+EERRL YV
Sbjct: 540 MMERNSEDEGGDQVQLMTLHASKGLEFPFVFMVGVEERILPHQTSIDEDNVDEERRLAYV 599

Query: 601 GITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIEWEVKKKPVTQEERMAKGQA 660
           GITRAQREL F +C+ERRQFGE ++   SRFL ELPQDD+ WE +K   T++ERM  G++
Sbjct: 600 GITRAQRELWFTLCRERRQFGETMRCEPSRFLHELPQDDLVWENRKPQQTEQERMQTGRS 659

Query: 661 HIANLRAMFKK 671
           HI+NLR MFKK
Sbjct: 660 HISNLRDMFKK 670