Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 722 a.a., DNA helicase II (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  387 bits (994), Expect = e-111
 Identities = 249/669 (37%), Positives = 372/669 (55%), Gaps = 17/669 (2%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN +Q EAV       LVLAGAGSGKTRV+T++IA+L+Q       +I AVTFTNKAA E
Sbjct: 10  LNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAE 69

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M+ERV +  G    R + + TFH L   ++R  F+  GL   F + D  DQL LLK + +
Sbjct: 70  MRERVEKVAGTNMGR-MWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQLRLLKRILK 128

Query: 123 K-QLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
              LD  +   R     I+  K+  L P    A     +Q L    +++YQ+       +
Sbjct: 129 SLNLDEKQYPPRQAQGYINGKKDQGLRPKHIDAGGFPIEQNLLK-IYQVYQESCDRAGLV 187

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241
           DF +++L    L  +   +   +Q R +++LVDE+QDTN  QY  +++L G+   + +VG
Sbjct: 188 DFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRMLAGQTANVMIVG 247

Query: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301
           DDDQSIY WRGA+ +NL    +DFP+   I+LEQNYRS   IL+A+N LIANNP    K 
Sbjct: 248 DDDQSIYGWRGAQVENLHRFLKDFPTATTIRLEQNYRSKGNILKASNALIANNPERLGKE 307

Query: 302 LFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKS 361
           L+++ A+GE + +  A NE  EA R I   I   +       D AILYR N QSR++E++
Sbjct: 308 LWTDEADGEPISLYCAFNEMDEA-RFIVGRINDWYEKGGNLSDCAILYRSNAQSRVLEEA 366

Query: 362 LTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKL 421
           L    + Y++ GG  FF R EIKD M Y+R++ N +DD AF R+VNTP R IG  TL+ L
Sbjct: 367 LLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIGDRTLDIL 426

Query: 422 GSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVR 481
            + A  +  +L+ A   L  E+ L+GR    +R F + +V + ++ +          +++
Sbjct: 427 RTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFMDLIVTLQEDTQDMALYRMADTVIQ 486

Query: 482 DIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDM 541
               +  +YE     K A  R++N+ +L   + A    + P++ E   +  +        
Sbjct: 487 ASGLKA-MYEAEKGEK-AHARIENLEEL---VTAARTFEMPEELEDMGE--LNAFLSHAA 539

Query: 542 MERGEENDD--SDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE-ENVEEERRLM 598
           +E GE   D  +DAVQLMTLH++KGLEF  V++ G EEGI P + +++E + ++EERRL 
Sbjct: 540 LEAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLC 599

Query: 599 YVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQ---DDIEWEVKKKPVTQEERM 655
           YVG+TRA  +L     + RR +G       SRF+ E+P    D+I  + +        R 
Sbjct: 600 YVGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRF 659

Query: 656 AKGQAHIAN 664
           +  ++ +AN
Sbjct: 660 STQKSAVAN 668