Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., DNA-dependent helicase II from Klebsiella michiganensis M5al

 Score =  399 bits (1026), Expect = e-115
 Identities = 253/644 (39%), Positives = 374/644 (58%), Gaps = 16/644 (2%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN +Q EAV       LVLAGAGSGKTRV+ ++IA+L+        +I AVTFTNKAA E
Sbjct: 10  LNDKQREAVAASRTNMLVLAGAGSGKTRVLVHRIAWLLSVENCSPYSIMAVTFTNKAAAE 69

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M+ R+ Q +G  +  G+ V TFH L   ++R       L   F + D +DQL LLK L +
Sbjct: 70  MRHRIGQLMGTTQG-GMWVGTFHGLAHRLLRAHHLDANLPQDFQILDSEDQLRLLKRLIK 128

Query: 123 KQ-LDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
              LD  +   R  +  I+  K++ L P   ++     +Q  +   ++ YQ+       +
Sbjct: 129 AMNLDEKQWPPRQAMWYINGQKDEGLRPHHIQSYGNPVEQT-WQKVYQAYQEACDRAGLV 187

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241
           DF +L+L    L  +   + Q ++ R   +LVDE+QDTN  QY  ++LL G+ G++ +VG
Sbjct: 188 DFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVG 247

Query: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301
           DDDQSIY WRGA+ +N+     DFP  + I+LEQNYRSTS IL AAN LI NN     K 
Sbjct: 248 DDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNSGRLGKK 307

Query: 302 LFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKS 361
           L+++ A+GE + +  A N+  EA  V+  I   +  N       AILYR N QSR++E++
Sbjct: 308 LWTDGADGEPISLYCAFNDLDEARFVVNRIKTWQ-ENGGALEQCAILYRSNAQSRVLEEA 366

Query: 362 LTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKL 421
           L Q  +PY++ GG  FF R EIKD ++YLR++ N +DD AF R+VNTP R IG  TL+ +
Sbjct: 367 LLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVV 426

Query: 422 GSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIA-DNAERGNTVEAVRALV 480
              +  R  +L+ A  EL  ++ L+GR    L+RF E + A+A + A+    V+  R ++
Sbjct: 427 RQTSRDRQLTLWQACRELLKDKVLAGRAASALQRFMELIDALAQETADMPLHVQTDR-VI 485

Query: 481 RDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRD 540
           +D      +YE     K  + R++N+ +L   + A  +    ++ E  +   +Q      
Sbjct: 486 KDSGLR-MMYEQEKGEK-GQTRIENLEEL---VTATRQFSYNEEDEDLMP--LQAFLSHA 538

Query: 541 MMERGEENDDS--DAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDE-ENVEEERRL 597
            +E GE   D+  DAVQLMTLH++KGLEFP V+++G EEG+ P Q ++DE   +EEERRL
Sbjct: 539 ALEAGEGQADTWQDAVQLMTLHSAKGLEFPQVFIVGVEEGMFPSQMALDEGGRLEEERRL 598

Query: 598 MYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELPQDDIE 641
            YVG+TRA ++LT    + RR +G+ +    SRF+ ELP+  +E
Sbjct: 599 AYVGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPESCVE 642