Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 1127 a.a., ATP-dependent DNA helicase, UvrD/REP family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  110 bits (274), Expect = 5e-28
 Identities = 93/289 (32%), Positives = 132/289 (45%), Gaps = 27/289 (9%)

Query: 4   NPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREM 63
           NP Q  A+    GP LVLAG G+GKTR +  ++  LV + G  AR I AVTFT +AA EM
Sbjct: 544 NPEQRSAIAGGPGPVLVLAGPGTGKTRTLVGRVQRLVAE-GVAARRIVAVTFTRRAATEM 602

Query: 64  KERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTEK 123
            ER++ TLG G        T H L      R       +    L ++    A  +   E 
Sbjct: 603 DERLSVTLGDGAPLP-RTDTLHALAFEFWHRS----SAQPPVLLSEE----AARRVFAEA 653

Query: 124 QLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNALDF 183
             D     LR     ++  +  M               L  A   + Y +Q  ++N  D+
Sbjct: 654 NPDATAQTLREAWDELAVCRERMQV-----------CSLALAPLLDRYVQQKAAWNLADY 702

Query: 184 DDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGR-LTVVGD 242
            DL+   +  + +   V   W    R++LVDE QD +  Q  LV+ L+   G     +GD
Sbjct: 703 TDLLEFWLEQIHNGLYV-PPW----RHVLVDEIQDLSPLQLALVRALLPPGGEGFFGIGD 757

Query: 243 DDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILI 291
            DQSIY +RGA       L E +P L ++ L  NYRS++ +L AA  L+
Sbjct: 758 PDQSIYGFRGAHGDVKGALDEAWPGLSVVTLRANYRSSASVLDAAGALM 806



 Score = 71.6 bits (174), Expect = 2e-16
 Identities = 43/96 (44%), Positives = 57/96 (59%), Gaps = 10/96 (10%)

Query: 551  SDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSI------DEENV----EEERRLMYV 600
            S+ VQ+M+LHA+KGLEF  V+L   E+GILP   +       D E++    EEERRL YV
Sbjct: 1005 SEKVQVMSLHAAKGLEFRAVFLPALEDGILPFAGAATLSGHADREHMRTDLEEERRLFYV 1064

Query: 601  GITRAQRELTFIVCKERRQFGELIKPSQSRFLDELP 636
            GITRA   L       R  +G  ++   SRFLD++P
Sbjct: 1065 GITRAAEGLYLSRASRRTLYGREVRLKASRFLDDVP 1100