Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 719 a.a., ATP-dependent DNA helicase, UvrD/REP family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  264 bits (675), Expect = 9e-75
 Identities = 200/657 (30%), Positives = 323/657 (49%), Gaps = 68/657 (10%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +LN  Q EAV  + GP LV+AGAGSGKTR +  ++A L+++ G  A +I  +TFT KAA 
Sbjct: 7   ELNAAQYEAVTTLDGPVLVIAGAGSGKTRTVVYRLANLLER-GVPASSILLLTFTRKAAN 65

Query: 62  EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
           EM +R ++ LG G  +G+   TFH    +++R+   A       ++ D  D +A ++   
Sbjct: 66  EMLQRASRLLGYGV-QGIAGGTFHAFAYSLLRQYHPARLEGRDLTIMDGADSVAAIQHCK 124

Query: 122 EKQ--LDGDKDL--LRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLF-----AHCFELYQ 172
           +      GDK     + +LS +S  +N  L  P  + + +    LL      +   E Y 
Sbjct: 125 DALGIARGDKSFPKTQTVLSLLSKSRNKEL--PLDEVLRREAYHLLVHADGVSRIGEAYA 182

Query: 173 KQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVG 232
           +    +  LD+DDL+     LLR   ++    ++R RY++VDEYQDTN  Q  LV+LL G
Sbjct: 183 EYRAEHGLLDYDDLLFEVERLLRERPDLLAHLRDRYRYIMVDEYQDTNLVQARLVQLLAG 242

Query: 233 ERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIA 292
           E G +  VGDD QSIY++RGA  QN++   + FP  ++IKLE+NYRST  +L   N ++A
Sbjct: 243 EGGNVMAVGDDAQSIYAFRGANVQNILSFPQFFPGTRIIKLEENYRSTQPVLDLTNAILA 302

Query: 293 NNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGN 352
             P  Y+K L++   +G   +V+   ++  +A  V++ +   + L      + A+L+R  
Sbjct: 303 EAPQAYRKHLYTSREDGVLPQVVRPLSDLTQASIVVSRV--SELLRTYPPHEIAVLFRAG 360

Query: 353 HQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKRE 412
             S  +E  L +  + ++  GG  +   A +KD+MAY R+++NP D  AF R+     R 
Sbjct: 361 FHSYHVEVQLNKLGIRFRKYGGVRYSEAAHVKDVMAYARLVLNPLDLPAFQRVA-ALSRG 419

Query: 413 IGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNT 472
           +GP T  +L   A                                       D A   + 
Sbjct: 420 VGPKTTLRLYEVARQ------------------------------------GDPAATAHA 443

Query: 473 VEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEV 532
                 L  D+   D L + + +P      ++ V + Y   +     D+  ++++ L+++
Sbjct: 444 CARYPQLRADLELLDRLRKRTPAPATL---LEEVIEHYQPRLEAAYPDDWPRRQQGLEQL 500

Query: 533 VQ--------RLTLRDMM--ERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPH 582
           VQ         L + D+   + G E +D D+V L T+H++KGLE+  V ++   E   P 
Sbjct: 501 VQIASAYRDLDLFISDLSLEDPGTEEEDRDSVVLSTIHSAKGLEWSAVIILDLVEDRFPS 560

Query: 583 QTSIDE-ENVEEERRLMYVGITRAQRELTFIVCKERRQFGE--LIKPSQSRFLDELP 636
           + ++   ++ EEERRLMYV  TRA+  L   V     Q GE      + S F+ ELP
Sbjct: 561 RHAVTRADDFEEERRLMYVACTRARERLMLFVPSSLYQRGEGGNQPAAPSPFVRELP 617