Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 805 a.a., DNA helicase II from Caulobacter crescentus NA1000

 Score =  397 bits (1021), Expect = e-115
 Identities = 258/648 (39%), Positives = 367/648 (56%), Gaps = 39/648 (6%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q EAV+   GP LVLAGAG+GKTRV+T ++A+++     +   I AVTFTNKAARE
Sbjct: 43  LNPEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILAVTFTNKAARE 102

Query: 63  MKERVAQTLGKGESRGLM-VSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
           M+ER+   +G  E+ GL  + TFH++   I+RR  + +GLK+ +++ D  D   LLK+L 
Sbjct: 103 MRERITHIIGP-EAEGLRWLGTFHSVAAQILRRHAELIGLKSNYTIIDTDDNERLLKQLI 161

Query: 122 EKQ-LDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAH-----CFELYQKQM 175
           E + +D  +   R+L   I  WKN   TP +      GE    FA+      +  YQ+++
Sbjct: 162 EAENIDAKRWTPRILSQIIDGWKNRGWTPDRVPTSEAGE----FANGKGISLYRQYQERL 217

Query: 176 QSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERG 235
           +  NA DF DL+L  + L   + +V   +Q R +Y++VDEYQDTN +QY  ++LL   R 
Sbjct: 218 RILNACDFGDLLLHNISLFTGHPDVLDEFQQRFKYVMVDEYQDTNVAQYLWLRLLAQGRQ 277

Query: 236 RLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNP 295
            +  VGDDDQSIY WRGA+  N++    DFP  K+++LE NYRST  IL AA+ LI  N 
Sbjct: 278 NVCCVGDDDQSIYGWRGAEVDNILRFERDFPGAKVVRLECNYRSTEHILAAASGLITANK 337

Query: 296 HVYQKALFSELAEGEKLKVILANNEDHEAE-RVIAEIIAHKFLNRTEYRDYAILYRGNHQ 354
               K L++    GEK+KV  +   D EAE R+IA+ I        +Y   AIL R + Q
Sbjct: 338 GRLGKTLWTPSKGGEKVKV--SGVWDGEAESRLIADEIERAKKAGRKYSQMAILVRASFQ 395

Query: 355 SRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIG 414
            R  E+     ++PYK+ GG  FF RAEI+D  AYLR++ +PDDD AF RIVNTPKR IG
Sbjct: 396 MRAFEERFVLLQIPYKVVGGPRFFERAEIRDAHAYLRLIQSPDDDLAFERIVNTPKRGIG 455

Query: 415 PATLEKLGSYANMRGKSLFTASFELGLEQHLSGR---GLENLRRFTEWLVAIADNAERGN 471
             +++KL   A + G S   A+ ++     L  R    L N  R  +   ++   A    
Sbjct: 456 DTSVQKLLQIARLGGISTVEAARQIITSDELPARTRTALSNFIRDLDRWRSLVGTAHHQR 515

Query: 472 TVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKE 531
            +E V   + +  Y D L      P  ++ R++N+ +L   + A            TL+ 
Sbjct: 516 LLETV---LEESGYTDAL-RLDKGP-TSQTRLENLKELVQSMGA----------FDTLEA 560

Query: 532 VVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSID---E 588
            ++ ++L   ++R       DAV +MTLH++KGLEFP V+L G EEG+ P Q S+D   E
Sbjct: 561 YLEHVSLVMDLDR---EATGDAVWIMTLHSAKGLEFPLVFLPGWEEGVFPSQRSMDDKGE 617

Query: 589 ENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDELP 636
           + +EEERRL YVGITRA+ E        R+ +G       SRF+DELP
Sbjct: 618 KGLEEERRLAYVGITRAREEARISFVANRQVYGRWTSQLPSRFVDELP 665