Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 710 a.a., UvrD-helicase domain-containing protein from Ralstonia sp. UNC404CL21Col

 Score =  573 bits (1477), Expect = e-168
 Identities = 324/670 (48%), Positives = 428/670 (63%), Gaps = 43/670 (6%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LN  Q E V Y+ GPCLVLAGAGSGKTRVIT KIA+L+   G++ ++IAAVTFTNKAA+E
Sbjct: 9   LNAAQSEGVHYLDGPCLVLAGAGSGKTRVITQKIAHLILDKGFEPKHIAAVTFTNKAAKE 68

Query: 63  MKERVAQTL-GKGESRG-------LMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQL 114
           M+ERVA+ + GK    G       L V TFH+LG+ I+R E + +GLK  FS+ D  D  
Sbjct: 69  MQERVAKLMDGKTREDGKRIPIKQLTVCTFHSLGVQILRAEAEHVGLKPRFSIMDSDDCF 128

Query: 115 ALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQL---LFAHCFELY 171
            +++E   +    DK L+R + STIS WKN ++ P  A A A     +     A  +  Y
Sbjct: 129 GMIQE---QLATTDKQLIRRVQSTISLWKNGLVDPDTAIAEALANNNVDDHQAALVYRNY 185

Query: 172 QKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLV 231
              + +Y A+DFDDLI +P  L   NE+VR +WQNR+RY LVDEYQDTN  QY+L+KLL 
Sbjct: 186 VATLHAYQAVDFDDLIRIPAELFARNEDVRLKWQNRLRYFLVDEYQDTNACQYQLLKLLA 245

Query: 232 G----ERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAA 287
           G         T VGDDDQ+IY WRGA   NL LL  DFP+LK+IKLEQNYRST RIL AA
Sbjct: 246 GGSHLRAPAFTAVGDDDQAIYGWRGATLDNLKLLQTDFPNLKVIKLEQNYRSTVRILNAA 305

Query: 288 NILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAI 347
           N +IA NP +++K L+SE   G+ + V  AN+E+HEAE V+ ++ AHKF  R ++RDYAI
Sbjct: 306 NAVIAQNPKLFEKTLWSEHGMGDPINVTSANDEEHEAESVVFKLSAHKFERRAQFRDYAI 365

Query: 348 LYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVN 407
           LYRGN Q+RL E+ L + R+PY LSGG SFF +AEIKD+ AYLR++ N DDD AF+R + 
Sbjct: 366 LYRGNFQARLFEQILRRERIPYVLSGGQSFFDKAEIKDLCAYLRLIANADDDPAFIRAIT 425

Query: 408 TPKREIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNA 467
           TPKR +G ATLE LG++A     SLF A+   G+E  L+ R LE LR F E++V ++D A
Sbjct: 426 TPKRGVGNATLEVLGAFAGQAKVSLFEAAMMGGIEAQLAPRQLEPLRVFCEFIVRLSDRA 485

Query: 468 ERGNTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVA--------DLEG 519
            +      +  ++  I YE +LY+T    + A+ +  NV +   W+          D EG
Sbjct: 486 AKEPAATLLDEMMEGIHYEAYLYDT-YDERQAQNKWTNVLEFLDWLKRKGTKPEKDDDEG 544

Query: 520 DNPD-----------QQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFP 568
           D+ +              K L E+ Q + L  M+E  EE  D DAV+L TLHASKGLE+P
Sbjct: 545 DDKEATGFDNADGLMDAGKNLLELTQTIALISMLEGKEE--DPDAVRLSTLHASKGLEYP 602

Query: 569 YVYLIGAEEGILPH---QTSIDEENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIK 625
           +V+L+G EEGILPH      + +E +EEERRLMYVGITRAQR L    CK+R++  E + 
Sbjct: 603 HVFLVGVEEGILPHCREDDDLTDEKIEEERRLMYVGITRAQRSLHISWCKKRKRARETVV 662

Query: 626 PSQSRFLDEL 635
              SR++ E+
Sbjct: 663 CEPSRYIAEM 672