Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., Superfamily I DNA or RNA helicase from Paraburkholderia bryophila 376MFSha3.1

 Score =  151 bits (382), Expect = 7e-41
 Identities = 163/630 (25%), Positives = 265/630 (42%), Gaps = 100/630 (15%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP+Q E  + +   C+ +A  G+GKT+ I  K A  +         + AVTF+  AA E
Sbjct: 5   LNPQQREVAE-LRRHCVAIACPGAGKTKTIAAKAALRLAD---PRAVVGAVTFSKDAAVE 60

Query: 63  MKERVAQTLGKGESRGLMVSTFHTL-GLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
           +++R+    G G    L+  TFH+L    + +R+    G +AG                 
Sbjct: 61  LRDRILALAGAGARSRLIAGTFHSLANRQLGKRDIATDGDRAGL---------------- 104

Query: 122 EKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKA---MAKGEQQLLFAHCFELYQKQMQSY 178
                    L R+L      WK D + P   +      + +     A  +  YQ+ +   
Sbjct: 105 ---------LARVLAELGLQWKVDEVIPVIERIKTNFGRVDANSPDAQLYHAYQEALTRN 155

Query: 179 NALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLT 238
             +DF D++ L V  + S +     + +    LLVDE+QDT+  QY  V+L       +T
Sbjct: 156 GKIDFQDMLRLSVAGMESGDIEPYGFTD----LLVDEFQDTDPLQYRWVELHARAGANVT 211

Query: 239 VVGDDDQSIYSWRGAKP-QNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHV 297
           VVGDDDQSIY +R A   + +    E F + +++ L  NYR  + IL AA+ +I NN   
Sbjct: 212 VVGDDDQSIYGFRAALGFRGMESFAESFSAQRVV-LGSNYRCRAEILSAADRVIRNNVER 270

Query: 298 YQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRL 357
             K L +E   G  +     ++E  +A   + ++       ++     AIL R N     
Sbjct: 271 VAKVLRAERGAGGAITARRFDDEYADAVAAVEQLQPQLGAGKS----CAILARTNRILDP 326

Query: 358 IEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPAT 417
           IE     + VPY  + G+S   R +   +M  L ++V     N                 
Sbjct: 327 IEAVCRSHGVPYYRASGSSVLNRPQ-GALMCNLLLIVEGRKQNG---------------- 369

Query: 418 LEKLGSYANMRGKSLFTASFELGLE------QHLSGRGLENLRRFTEWLVAIADNAERGN 471
           L+ +  Y  M    L     ++G E      + L G GL                    +
Sbjct: 370 LDAVLGYTGMSSTHLSALHQDMGAELVQRAKKDLVGLGLPE------------------D 411

Query: 472 TVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWIVADLEGDNPDQQEKTLKE 531
           T  A RA ++  R  +W     +  K   + +  V ++      D   D   +  +   +
Sbjct: 412 TASAYRAFMK--RLAEW--TQMSERKFYSLALDGVLEMMMTYARD---DQAKRAIQATYD 464

Query: 532 VVQRLT-----LRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSI 586
           V+ RLT       + ++R        A+ L T+H+SKGLE+ +V++  AEEG++P + + 
Sbjct: 465 VLSRLTGTFGERIEYLKRDNNKPADGALVLTTMHSSKGLEWDHVWITRAEEGVVPDEKAT 524

Query: 587 DEENVEEERRLMYVGITRAQRELTFIVCKE 616
           +     EERRL YV +TRA+  LT    K+
Sbjct: 525 E----SEERRLFYVAMTRARDTLTIATIKK 550