Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., ATP-dependent DNA helicase UvrD from Paraburkholderia bryophila 376MFSha3.1

 Score =  369 bits (946), Expect = e-106
 Identities = 254/679 (37%), Positives = 360/679 (53%), Gaps = 40/679 (5%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q  AV   + P L+LAGAGSGKTRV+  +IA+L+Q        I AVTFTNKAARE
Sbjct: 8   LNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNKAARE 67

Query: 63  MKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELTE 122
           M  R++  L   ++RG+ + TFH L   ++R   +  GL A F + D  DQL+ +K L +
Sbjct: 68  MMSRLSALLPI-DTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKRLMK 126

Query: 123 K-QLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNAL 181
              +D +K   + L   I+N K   L P    A     ++  F   +E Y +Q Q    +
Sbjct: 127 GLNIDDEKYPAKNLQYFINNAKEQGLRPKDVDATDNFNRK--FVELYEAYDQQCQREGVV 184

Query: 182 DFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGRLTVVG 241
           DF +L+L    LL  N  +R  +Q R +++LVDE+QDTN  QY  +KLL G+   +  VG
Sbjct: 185 DFPELLLRCYELLAHNPPLRAHYQARFKHILVDEFQDTNKLQYAWLKLLAGQTNSIFAVG 244

Query: 242 DDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANNPHVYQKA 301
           DDDQSIY++RGA   N+     +F    LIKLEQNYRS   IL AAN LIANN     K 
Sbjct: 245 DDDQSIYAFRGANVGNMRDFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRRLGKN 304

Query: 302 LFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKS 361
           L ++   GE ++V  +  +  EA  ++ EI A      T   + AILYR N QSR IE +
Sbjct: 305 LRTDAGHGEPVRVYESATDSQEAGWIVEEIKA-LISTGTSRSEIAILYRSNAQSRTIEHT 363

Query: 362 LTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIGPATLEKL 421
           L    + Y++ GG  FF R E+K  +AYLR++ NP+DD AF R+VN P R IG  ++E+L
Sbjct: 364 LVNAGIAYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQL 423

Query: 422 GSYANMRGKSLFTA-------------SFELGLEQHLSGRGLENLRRFTEWLV---AIAD 465
              A +   S+  A             SF   + +  +     +L    E++V    +AD
Sbjct: 424 ADAARLYNCSMAAAIPYVAGKAGSSLASFANLIGKMRAETQQMSLPETVEYVVRASGLAD 483

Query: 466 ---NAERG-----NTVEAVRALVRDIRYEDWLYETSASP------KAAEMRMKNVSDLYS 511
              N   G     N  E V A    +  E +  +T A          A   +   +D  +
Sbjct: 484 FYQNEREGQDRLENLQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPELAVATDDPN 543

Query: 512 WIVADLEG-DNPDQQEKTLKEVVQRLTLRDMMERGEENDDS--DAVQLMTLHASKGLEFP 568
            +V D  G  +P Q   T+  +   L+    +E G+    +  +AVQLMT+HA+KGLEF 
Sbjct: 544 TVVLDAPGIADPAQNPDTMTPLAGFLS-HASLEAGDNQAQAGQEAVQLMTVHAAKGLEFT 602

Query: 569 YVYLIGAEEGILPHQTS-IDEENVEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPS 627
            V++ G EEG+ PH+ S ++ + +EEERRLMYV ITRA+  L     + R   G+     
Sbjct: 603 AVFITGLEEGLFPHENSAMESDGLEEERRLMYVAITRAKERLYLSFAQSRMLHGQTRYNI 662

Query: 628 QSRFLDELPQDDIEWEVKK 646
           +SRF DELPQ+ ++W   K
Sbjct: 663 RSRFFDELPQETLKWLTPK 681