Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., ATP-dependent DNA helicase Rep from Paraburkholderia bryophila 376MFSha3.1

 Score =  589 bits (1518), Expect = e-172
 Identities = 331/709 (46%), Positives = 446/709 (62%), Gaps = 52/709 (7%)

Query: 3   LNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAARE 62
           LNP Q+EAV+Y+ GPCLVLAGAGSGKTRVIT KIA+L++  G++ R+IAAVTFTNKAA E
Sbjct: 5   LNPAQNEAVRYLDGPCLVLAGAGSGKTRVITQKIAHLIEAKGFEPRHIAAVTFTNKAAAE 64

Query: 63  MKERVAQTLG------------KGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDD 110
           M+ERV + L             K     L V TFH+LG+ I+R+E + +GLK  FS+ D 
Sbjct: 65  MRERVGKLLEGKTLTTPGKEGRKVPVNQLTVCTFHSLGVQILRQEAEHVGLKPQFSIMDS 124

Query: 111 QDQLALLKELTEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFEL 170
            D   +++E        DK  +R + S IS WKN ++ P QA A+A  E +   A  +  
Sbjct: 125 DDCFGMIQEQVGST---DKGFIRKIQSIISLWKNGLIMPEQAIAIAANEDEHQAAIVYRN 181

Query: 171 YQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLL 230
           Y   + +Y A+DFDDLI LP  L  SNE+VR RWQN++RYLL+DEYQDTN  QYEL+K L
Sbjct: 182 YVATLHAYQAVDFDDLIRLPAELFASNEQVRDRWQNKLRYLLIDEYQDTNACQYELLKQL 241

Query: 231 VGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANIL 290
            G R   T VGDDDQ+IY WRGA  +NL  LG+DFP L +IKLEQNYRST RIL AAN +
Sbjct: 242 AGPRAAFTAVGDDDQAIYGWRGATLENLAQLGKDFPKLHVIKLEQNYRSTVRILTAANNV 301

Query: 291 IANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYR 350
           IANNP +++K L+SE   G+ + V   N+E+HEAE V+  + AHKF  R  +RDYAILYR
Sbjct: 302 IANNPKLFEKKLWSEHGMGDSITVTPCNDEEHEAESVVFRLSAHKFERRANFRDYAILYR 361

Query: 351 GNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPK 410
           GN Q+R+ E+ L + R+PY LSGG SFF +AEIKDI AYLR++ N +DD AF+R + TP+
Sbjct: 362 GNFQARIFEQVLRRERIPYVLSGGQSFFDKAEIKDICAYLRLIANANDDPAFIRAITTPR 421

Query: 411 REIGPATLEKLGSYANMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERG 470
           R +G  TLE LGS+A     SLF A +  G+E  LS R +E +R F +++  + D AE+ 
Sbjct: 422 RGVGNTTLEALGSFAGQAKVSLFEAVYMGGIEARLSPRQIEPMRVFCDFMQRLTDRAEKD 481

Query: 471 NTVEAVRALVRDIRYEDWLYETSASPKAAEMRMKNVSDLYSWI-----VADLEGDNPD-- 523
                +  L+  I YE +LY+ +   + A+ + +NV +   W+      A+ +G +    
Sbjct: 482 AAGTLLDELMDAIHYEAYLYD-AFDERQAQSKWQNVLEFIEWLKRKGTKAEPQGSDESAG 540

Query: 524 --QQE--------------KTLKEVVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEF 567
              QE              K L  ++Q + L  M+E  EE  D DAV+L T+HASKGLE+
Sbjct: 541 SGNQEATGYDTADGFGDTGKNLLGLIQTVALMSMLEGREE--DPDAVRLSTVHASKGLEY 598

Query: 568 PYVYLIGAEEGILPHQTSIDEE-----NVEEERRLMYVGITRAQRELTFIVCKERRQFGE 622
           P+V+L+G EEGI+PH+   D+E      +EEERRLMYV ITRAQR L    CK+R++  E
Sbjct: 599 PHVFLVGVEEGIMPHRGGADDEPIDDARIEEERRLMYVAITRAQRSLHLNWCKKRKRARE 658

Query: 623 LIKPSQSRFLDELPQDDIEWEVKKKPVTQEERMAKGQAHIANLRAMFKK 671
            +    SRF+ E+  DD        P T EE     +  +A+L+A+ +K
Sbjct: 659 TVVCEPSRFIPEMLLDD------APPPTPEEAPMSPKDRLASLKALLQK 701