Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 788 a.a., ATP-dependent DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  384 bits (987), Expect = e-111
 Identities = 242/645 (37%), Positives = 369/645 (57%), Gaps = 16/645 (2%)

Query: 2   KLNPRQDEAVKYVSGPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAR 61
           +LN  Q  AV Y  GP LV+AGAGSGKTRV+T KIAYL++  GY+  NI A+TFTNKAAR
Sbjct: 8   ELNESQCAAVTYNDGPSLVIAGAGSGKTRVLTYKIAYLLEN-GYQPWNILALTFTNKAAR 66

Query: 62  EMKERVAQTLGKGESRGLMVSTFHTLGLNIIRREFKALGLKAGFSLFDDQDQLALLKELT 121
           EMK+R+A+ +G   +R L + TFH++   I+R E K +G  + F+++D  D  +L++ + 
Sbjct: 67  EMKDRIARQVGMERARYLWMGTFHSVFSRILRAEAKYIGFTSQFTIYDSADSKSLIRSII 126

Query: 122 EKQ-LDGDKDLLRLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFA------HCFELYQKQ 174
           ++  LD       ++ + IS+ KN +++P    A  +  +  + A        +  Y ++
Sbjct: 127 KEMGLDEKTYKPGMVQARISSAKNHLVSPTGYAANKEAYEGDMAAKVPAVREIYTRYWER 186

Query: 175 MQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGER 234
            +   A+DFDDL++   +L R   EV  R++ + RY+LVDEYQDTN +Q+ +V  L  E 
Sbjct: 187 CRQAGAMDFDDLLVYTYILFRDFPEVLARYREQFRYVLVDEYQDTNYAQHSIVLQLTKEN 246

Query: 235 GRLTVVGDDDQSIYSWRGAKPQNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIANN 294
            R+ VVGDD QSIYS+RGA   N++   + +P+ K+ KLEQNYRST  I+ AAN LI  N
Sbjct: 247 QRVCVVGDDAQSIYSFRGADIDNILYFTKVYPNTKVFKLEQNYRSTQTIVCAANSLIEKN 306

Query: 295 PHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQ 354
               +K +FSE   GE + V  A ++  E + V  +I   +  +   Y D+AILYR N Q
Sbjct: 307 ERQIRKEVFSEKERGEPIGVFQAYSDVEEGDIVANKIAELRREHSYGYADFAILYRTNAQ 366

Query: 355 SRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAFLRIVNTPKREIG 414
           SR+ E++L +  +PYK+ GG SF+ R EIKD++AY R++VNP+D+ AF RI+N P R IG
Sbjct: 367 SRVFEEALRKRSMPYKIYGGLSFYQRKEIKDVIAYFRLVVNPNDEEAFKRIINYPARGIG 426

Query: 415 PATLEKLGSYANMRGKSLFTASFE-LGLEQHLSGRGLENLRRFTEWLVA-IADNAERGNT 472
             T+ K+ S A   G SL+ A  E L    +++      L+ F E +   + D  ++   
Sbjct: 427 DTTVGKIISAATENGVSLWAALCEPLSYGLNINKGTHTKLQGFRELIEGFMTDQVDKSAY 486

Query: 473 VEAVRALVRDIRYEDWLYETSASPKAAEMRMKN-VSDLYSWIVADLEGDNPDQQEKTLKE 531
                 + R     D   +TS    + +  ++  V+ +  +     E  NP+        
Sbjct: 487 EIGTDIIRRSGIINDVCQDTSPENLSRKENIEELVNGMNDFCALRQEEGNPNISLTDFLS 546

Query: 532 VVQRLTLRDMMERGEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEEN- 590
            +  LT +D     ++ DD + + LMT+H++KGLEF  V+++G EE + P     D    
Sbjct: 547 EIALLTDQD----SDKADDGEKITLMTVHSAKGLEFKNVFVVGLEENLFPSGMVGDSPRA 602

Query: 591 VEEERRLMYVGITRAQRELTFIVCKERRQFGELIKPSQSRFLDEL 635
           +EEERRL YV ITRA+        K R ++G++   S SRFL ++
Sbjct: 603 LEEERRLFYVAITRAEEHCYISFAKTRFRYGKMEFGSPSRFLRDI 647