Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 720 a.a., ATP-dependent DNA helicase from Burkholderia phytofirmans PsJN

 Score =  214 bits (546), Expect = 9e-60
 Identities = 195/655 (29%), Positives = 315/655 (48%), Gaps = 78/655 (11%)

Query: 2   KLNPRQDEAVKYVS-------GPCLVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVT 54
           KLN  Q EAV Y +       G  LV+AGAGSGKT  + +++A LV + G   R I  +T
Sbjct: 30  KLNDAQREAVDYGADTPTAPPGALLVIAGAGSGKTNTLAHRVANLVVK-GADPRRILLLT 88

Query: 55  FTNKAAREMKERVAQTLGKGE------SRGLMVS-TFHTLGLNIIRREFKALGLKAGFSL 107
           F+ +AA EM  RV +  G         ++GL  S TFH++G  ++R     +GL   F++
Sbjct: 89  FSRRAALEMTRRVTRIAGAALGSRAALAQGLTWSGTFHSVGARLLREYADLIGLAPAFTI 148

Query: 108 FDDQDQLALLKEL-------TEKQLDGDKDLLRLLLSTISNWKNDMLTPPQAKAMA---- 156
            D +D   L+  +        +++    K     + S + N     L     KA      
Sbjct: 149 NDREDSADLMNLVRHELGLSAKERRFPAKGTCFAIYSRVVN-TGASLGQVLDKAFPWCRE 207

Query: 157 -KGEQQLLFAHCFELYQKQMQSYNALDFDDLILLPVLLLRSNEEVRQRWQNRIRYLLVDE 215
            + + ++LFA   E  QKQ    + LD+DDL+L     + +   +      R  ++LVDE
Sbjct: 208 WEADLRMLFAAYVEAKQKQ----SVLDYDDLLLY-WSHMAAEPGIAADLSGRFDHVLVDE 262

Query: 216 YQDTNTSQYELVKLLVGERGRLTVVGDDDQSIYSWRGAKPQNLVLLGEDF-PSLKLIKLE 274
           YQDTN  Q  ++  L  +   LTVVGDD QSIYS+RGA  +N++     F P  K + LE
Sbjct: 263 YQDTNRLQASILLALKPDGRGLTVVGDDAQSIYSFRGATVRNILDFPAHFDPPAKQVTLE 322

Query: 275 QNYRSTSRILRAANILIANNPHVYQKALFSELAEGEKLKVILANNEDHEAERVIAEIIAH 334
           +NYRS++ IL A+N +I      Y K L+++ A  ++ +++   +E  +A  ++ +++  
Sbjct: 323 RNYRSSAPILAASNAVIELASERYTKNLWTDKASAQRPRLVTVADEADQARYIVEQVLEA 382

Query: 335 KFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVPYKLSGGTSFFARAEIKDIMAYLRVLV 394
           +     + +  A+L+R  H S  +E  LT+  +P+   GG  F     +KD++A LR   
Sbjct: 383 R-EQGMKLKSQAVLFRAAHHSAALEIELTRRNIPFVKFGGLKFLDSVHVKDVLAVLRWAE 441

Query: 395 NPDDDNAFLRIVNTPKREIGPATLEKL----------GSYANMRGKSL--FTASFELGLE 442
           NP D  A  R+V      +GPAT  ++          G+ A+  G +L  FTA       
Sbjct: 442 NPRDRVAGFRVVQL-LPGVGPATAARVLDEVVACAGSGNPADTAGGALAAFTA------- 493

Query: 443 QHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRYEDWL---YETSASPKAA 499
                R  E+   F + + +I     R     A   +VR   YE  L   +E +A   A 
Sbjct: 494 ---PARAQEDWHPFVKLMSSIYG---RQTPWPAEFEMVRR-WYEPHLERNHEDAAIRHAD 546

Query: 500 EMRMKNVSDLYSWIVADLEGDNPDQQEKTLKEVVQRLTLRDMMERGEENDDSDAVQLMTL 559
             +M++++  Y+             +E+ L E+          E G    D D + L T+
Sbjct: 547 VSQMESIAGTYA------------SRERFLTELTLDPPDATSDESGVPLIDEDYLILSTI 594

Query: 560 HASKGLEFPYVYLIGAEEGILPHQTSI-DEENVEEERRLMYVGITRAQRELTFIV 613
           H++KG E+  V+++   +G +P       EE ++EERRL+YV +TRA+ +L  +V
Sbjct: 595 HSAKGQEWRNVFVLNGVDGCIPSDLGTGSEEEIDEERRLLYVAMTRAKEDLHIVV 649