Pairwise Alignments

Query, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., UvrD/REP helicase (RefSeq) from Shewanella sp. ANA-3

 Score =  141 bits (355), Expect = 1e-37
 Identities = 153/616 (24%), Positives = 269/616 (43%), Gaps = 74/616 (12%)

Query: 19  LVLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKERVAQTLGKGESRG 78
           LV A  GSGKT V+      L+ + G  A ++  +TFT+ A  E+ ER+   L       
Sbjct: 18  LVCALPGSGKTYVLVELTKRLLSRDG--AYSVHLLTFTDAARVELTERMLHALTPRAMER 75

Query: 79  LMVSTFHTLGLNIIRREFKALGLKAGF------SLFDDQDQLALLKELTEKQLDGDKDLL 132
           + +STFH+  L + R +     L A        S+ ++ D L L+ +   K      D++
Sbjct: 76  VTISTFHSTALAMTRGKLNRRLLMANELMLFVKSVLNEADHLDLIDKFRFKV----PDVV 131

Query: 133 RLLLSTISNWKNDMLTPPQAKAMAKGEQQLLFAHCFELYQKQMQSYNALDFDDLILLPVL 192
           RL         ++M           G +  L+    ELY+  +      DF+ +  L V 
Sbjct: 132 RLF--------DEMGRSQDLSKEYSGTEVALY----ELYKDMLIKQGKTDFNVVCQLSVS 179

Query: 193 LLRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVK--LLVGERGRLTVVGDDDQSIYSW 250
            L   E           ++LVDE+QDT+  QY  ++   L+G++  L VVGDDDQ+IYS+
Sbjct: 180 WLAQREIPPVS----ATHILVDEFQDTDALQYMWLREHALLGKK--LVVVGDDDQAIYSF 233

Query: 251 RGAKP-QNLVLLGEDFPSLKLIKLEQNYRSTSRILRAANILIA-NNPHVYQKALFSELAE 308
           RG +   N+V    +F +   + L   +R +  IL  A +LI  NNP    K + +   E
Sbjct: 234 RGGQGYDNMVAFQSEFNADAYV-LRDCFRCSKEILNRAGMLIKFNNPDRIDKPMNAVREE 292

Query: 309 GEKLKVILANNEDHEAERVIAEIIAHKFLNRTEYRDYAILYRGNHQSRLIEKSLTQNRVP 368
              +K+I +   D++  +++  +         E   +A++ R N     +E  +  + + 
Sbjct: 293 QGTVKIIKSGTMDNQLNQILDAV-------SKEPHTWAVIARNNAILDRVETVIQGHGIE 345

Query: 369 YKLSGGTSFFARAEIKDIMAYLRVLVNPDDDNAF---LRIVNTPKREIGPATLEKLGSYA 425
           Y   GG SFF       ++    V+    DD+     L  ++ P+ E    T   +G   
Sbjct: 346 YNRRGGKSFFDGVAPYSLIQIASVISGKHDDHTLHRALAALSVPEAE----TARIIGLCR 401

Query: 426 NMRGKSLFTASFELGLEQHLSGRGLENLRRFTEWLVAIADNAERGNTVEAVRALVRDIRY 485
               K+ F       +  H   +   +L      + A  ++A+R      V+ L   +  
Sbjct: 402 T--AKTTFGGLKHAEIGHHADLQKFHSLAEAWHDIPAGREDAKRTYMQSIVKLLAIHLDK 459

Query: 486 EDWLYETSASPKAAEMRMKNVSDLYSWIVAD-LEGDNPDQQEKTLKEVVQRLTLRDMMER 544
            D                      ++ +V D + G + +   +++ ++   L  +   ++
Sbjct: 460 RD--------------------QKHAQVVGDVIAGRHWESLGESIAQLKSSLDCKKRKDQ 499

Query: 545 GEENDDSDAVQLMTLHASKGLEFPYVYLIGAEEGILPHQTSIDEENVEEERRLMYVGITR 604
            EE   +  + L+T+H+SKGL+F  V+++G++ G +P + ++ E  + EERRLMYV +TR
Sbjct: 500 SEE--AAPKLSLITMHSSKGLQFDNVWIVGSDTGTIPSKEALAEGKIAEERRLMYVAMTR 557

Query: 605 AQRELTFIVCKERRQF 620
           A   LT     E  +F
Sbjct: 558 AISSLTMSYTSEPSEF 573