Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  229 bits (583), Expect = 1e-64
 Identities = 129/372 (34%), Positives = 210/372 (56%), Gaps = 17/372 (4%)

Query: 8   MLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPN 67
           ++L+ +LL      F++++Q +    + + P+P   V V  A    W   +  +G ++  
Sbjct: 12  VVLLVVLLLAGYKAFSIYQQIQ----MFSAPKPPVSVAVAKAIEQPWQARLPTVGSLKAL 67

Query: 68  QGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYK 127
           QGV L+ E AG + ++ F+SG +V   QPL+ LDS VE A L++ EA L  A+  + R +
Sbjct: 68  QGVDLSLEIAGTVQKVQFQSGQKVKAGQPLLQLDSEVESALLETAEADLGLAQLDFGRGR 127

Query: 128 GLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187
            L    +ISK  +D   A      A +  LKA++A+++I APF+G IGIR V +G YL  
Sbjct: 128 QLVGSQAISKGEFDRLSAQLKKNQATVNQLKASLAKKQILAPFSGTIGIRQVDVGDYLAS 187

Query: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247
           GT I  L+D S + + F VP++ + R+++ Q V++ V AYP  +F G+ISAI P V   +
Sbjct: 188 GTVIATLQDLSSLYVDFYVPEQTVPRLAVAQPVNVSVSAYPGQTFVGTISAINPKVEDST 247

Query: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENG- 306
             + V+A + N DGKL  GMFA   +ILP +   + +P++A+TYTLYG+++Y+V+++   
Sbjct: 248 RNVLVRATLANPDGKLLPGMFANLQVILPDVAAGIVVPESAVTYTLYGNSMYVVAQKKAA 307

Query: 307 ----EKR--------VQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIV 354
               EK          ++  V+ GER +    + +GV+ GD VV  GQ++L NG  + + 
Sbjct: 308 DGTVEKDDKGQPVLIAERRFVETGERRDGQVLVTKGVQSGDQVVIAGQIKLDNGTPIAVS 367

Query: 355 ESDATTPPAETP 366
           +    T     P
Sbjct: 368 DDKTLTEQNSPP 379