Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., Probable RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N2E2

 Score =  106 bits (265), Expect = 1e-27
 Identities = 85/348 (24%), Positives = 156/348 (44%), Gaps = 25/348 (7%)

Query: 43  PVTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLD- 101
           PV V  A   D+    +A+G +     + + +   G + +I FE G  V     L  +D 
Sbjct: 67  PVRVAPAVTGDFPLYFKALGTVTALNTINVRSRVGGELVKIAFEEGQMVKAGDLLAEIDP 126

Query: 102 ----SAVERAN--LKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEA-------SYY 148
               +A+ +A   L   +A+L  A+  +ERY+GL+A+ SI+K++ D A A       +  
Sbjct: 127 RPYQNALLQAEGTLLQNQAQLKNAQVDFERYRGLYAEDSIAKQTLDTAAALVGQYQGTVK 186

Query: 149 ALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVMRLRFTV 206
              A +   K  +   +I+AP +G +G+R + +G  +     T +  +  T  + + FT+
Sbjct: 187 TNQAAVNDAKLNLEFTKIRAPISGRVGLRQLDIGNLVAANDTTALAVITQTQPISVVFTL 246

Query: 207 PQRDISRISLDQE--VDIFVDAYPQTSFK----GSISAIEPAVSVQSGLIQVQADIPNSD 260
           P+ ++  +         + V+A+ +   K    G + +++  + V +G ++ +A   N D
Sbjct: 247 PENNLDTVLARYRSGAKLPVEAWDRGDVKLQASGVLQSLDNQIDVTTGTLKFKARYENRD 306

Query: 261 GKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGER 320
             L    F    ++   L+     P  AI +   G  VY +    G+K+V    +K+G  
Sbjct: 307 QSLFPNQFVNVRLLADTLKGVTLAPTAAIQFGTNGTFVYALE---GDKKVTIKKLKIGAS 363

Query: 321 SESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIVESDATTPPAETPML 368
             +   + EG+  GD VV  G  RL  G++V +V      P   T  L
Sbjct: 364 DGANTVVTEGLAAGDRVVLEGTDRLKEGSEVEVVSDSQEVPTTPTEHL 411