Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., RND transporter from Pseudomonas fluorescens FW300-N2C3

 Score =  230 bits (587), Expect = 4e-65
 Identities = 131/372 (35%), Positives = 211/372 (56%), Gaps = 17/372 (4%)

Query: 8   MLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPN 67
           ++L+ +LL      F+++  Q+I  +  + P+P   V V TA    W   +  +G ++  
Sbjct: 12  VVLLVVLLLAGYKAFSVY--QEIQSF--SEPKPPISVAVATAAQQPWQARLPTVGSLKAL 67

Query: 68  QGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYK 127
           QGV L+ E AG + ++ F+SG +V   QPL+ LDS VE A L++ EA L  ++  + R +
Sbjct: 68  QGVDLSLEIAGTVQKVQFQSGQKVKVGQPLLQLDSEVESALLETAEADLGLSQVDFGRGR 127

Query: 128 GLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187
            L    +ISK  +D   A      A +  LKA++A++ I APF+G IGIR V +G YL  
Sbjct: 128 QLVGSQAISKGEFDRLSAQLKKNQATVNQLKASLAKKHILAPFSGTIGIRQVDVGDYLAS 187

Query: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247
           GT I  L+D S + + F VP++ + R+++ Q V++ V AYP  +F G+ISAI P V   +
Sbjct: 188 GTVIATLQDLSSLYVDFYVPEQSVPRLAVAQSVNVSVSAYPGQTFVGTISAINPKVEDST 247

Query: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENG- 306
             + V+A + N DGKL  GMFA   +ILP +   + +P++A+TYTLYG+++Y+V+++   
Sbjct: 248 RNVLVRATLANPDGKLLPGMFANLQVILPDVAAGIVVPESAVTYTLYGNSMYVVTQKKAA 307

Query: 307 ----EKR--------VQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRIV 354
               EK          ++  V+ GER +    + +GV+ G+ VV  GQ++L NG  + I 
Sbjct: 308 DGTVEKDDKGQPVLIAERRFVETGERRDGQVLVSKGVQSGEQVVIAGQIKLDNGTPIAIS 367

Query: 355 ESDATTPPAETP 366
           +    T    TP
Sbjct: 368 DDKTLTEQNSTP 379