Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 382 a.a., Probable Co/Zn/Cd efflux system membrane fusion protein from Pseudomonas fluorescens FW300-N1B4

 Score =  228 bits (580), Expect = 3e-64
 Identities = 129/379 (34%), Positives = 207/379 (54%), Gaps = 14/379 (3%)

Query: 1   MKKWTFFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEA 60
           +++    ML + +L+   + G+  F    + +  +  P+P   V V TA    W   +  
Sbjct: 2   LRRRMLIMLGVVLLIVLVLAGYKAFSIYTMMQGFSV-PKPPISVAVATATERPWQSRLPT 60

Query: 61  IGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAK 120
           +G +   QGV L+ E AG + ++ FESG +V   QP++ LD+AVE A L + +A L  A+
Sbjct: 61  VGTLTALQGVDLSLEIAGTVKEVQFESGQKVKAGQPILQLDTAVETALLATAQADLGLAQ 120

Query: 121 AKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVF 180
             Y R   L    +ISK  +D   A      A +  LKA + R+ I APF+G IGIR V 
Sbjct: 121 LDYGRGSQLVGSQAISKGEFDRLSAVLQKSRATVNQLKAALERKRILAPFSGTIGIRQVD 180

Query: 181 LGQYLQPGTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIE 240
           +G Y+  GT I  L+D S + + F VP++ + +I+L Q V + V AYP  SF G+ISAI 
Sbjct: 181 VGDYVASGTMIATLQDISSLYVDFFVPEQSVPKIALGQPVQVIVSAYPTESFPGTISAIN 240

Query: 241 PAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYI 300
           P V   +  + V+A + N D KL  GMFA   ++LP  + ++ +P++AITYTLYG+++Y+
Sbjct: 241 PKVESSTRNVLVRATLANPDDKLLPGMFASLQVMLPDPQPRIVVPESAITYTLYGNSLYV 300

Query: 301 VSEENGEKR-------------VQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSN 347
           V+++  E                ++  ++ GER + +  I +GV+ G+ VVT GQ++L +
Sbjct: 301 VAQKKAEDGSLEKDDKGEPILIAERRFIETGERRDGMVMITKGVQNGEKVVTGGQIKLDH 360

Query: 348 GAKVRIVESDATTPPAETP 366
           GA + I +       +  P
Sbjct: 361 GAHIAISDDKTLAEKSSQP 379