Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  107 bits (268), Expect = 4e-28
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 17/326 (5%)

Query: 44  VTVVTANPVDWVPVIEAIGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSA 103
           V +VT     +    E  G     +   +  +  G+I +  F  G+ V   Q L  +D++
Sbjct: 37  VGIVTLQAEPFAVTTELPGRTRAYRIAEVRPQVNGIIQKRLFTEGSDVKAGQQLYQIDAS 96

Query: 104 VERANLKSTEARLPAAKAKYERYKGLFAKGSISKESYDEAEASYYALSADIESLKATIAR 163
           V  A LKS +A + ++K+  +RY  L    ++SK++YDEA A+     A++E  +  +  
Sbjct: 97  VYEATLKSAQASVASSKSLADRYAELVKDQAVSKQAYDEARAASLQAEAELERARIDVRY 156

Query: 164 REIKAPFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVMRLRFTVPQRDISRISLD---- 217
            ++ AP +G +G   V  G  +  G   ++  ++    + +  T P RD+  +  D    
Sbjct: 157 TKVLAPISGRVGRSAVTEGALVSNGQAQELATIQQLDPIYVDVTQPARDLLALRRDLAEG 216

Query: 218 ---------QEVDIFVDAYPQTSFKGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMF 268
                     +V + ++     + +G +   E  V   +G + ++A  PN D  L  GMF
Sbjct: 217 RLQKSGDNAAKVTLKLEDGSDYAHEGKLEFSEVTVDAGTGSVTLRAVFPNPDKDLLPGMF 276

Query: 269 ARANIILPKLENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHIL 328
             A ++       + +PQ  +T    GD   +V   N E +V+   +K      +   + 
Sbjct: 277 VHAQLVAGMKSEAILVPQQGVTRNTKGDPTAMV--VNAESKVEVRPIKTERAVGNRWLVG 334

Query: 329 EGVKPGDVVVTTGQVRLSNGAKVRIV 354
           EG++PGD V+T G   +  G +V  V
Sbjct: 335 EGLQPGDRVITEGLQFIQPGVEVEAV 360