Pairwise Alignments

Query, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  122 bits (305), Expect = 2e-32
 Identities = 100/391 (25%), Positives = 186/391 (47%), Gaps = 31/391 (7%)

Query: 6   FFMLLIAILLFGSVIGFNLFKQQKIAEYLANRPE-----PEFPVTVVTANPVDWVPVIEA 60
           + +L++A+   G ++ +     Q+  +    RP         PV V      ++    +A
Sbjct: 15  WLLLILAVAAIGLLVWWLWPAPQETPQRPGGRPGFGAFGGPVPVRVAKVEQGEFEVFNKA 74

Query: 61  IGFIEPNQGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDS-----AVERAN--LKSTE 113
           +G + P   V L +   G + ++ FE G +V K   L ++D      A+++A   L+   
Sbjct: 75  LGSVTPLNTVNLRSRVGGELVELRFEEGQRVKKGDLLAVIDPRPYKVALQQAEGTLQQNR 134

Query: 114 ARLPAAKAKYERYKGLFAKGSISKESYDEAEA--SYY-----ALSADIESLKATIARREI 166
           A+L  A+  +ERY+GLFA  SI+K++ D  EA  S Y     A  A +   +  +   +I
Sbjct: 135 AQLKNAQVDFERYRGLFADDSIAKQTLDTQEALVSQYQGTLAANQASVNEARLNLEFTQI 194

Query: 167 KAPFAGVIGIRNVFLGQYLQPG--TDIVRLEDTSVMRLRFTVPQRD----ISRISLDQEV 220
           ++P  G +G+R + +G  +     T +V +  T  M + FT+P+ D    ++R     ++
Sbjct: 195 RSPIDGRVGLRQLDVGNLVAANDTTPLVVITQTQPMSISFTLPEGDLLPVLTRYRQGDKL 254

Query: 221 DIFV-DAYPQTSF-KGSISAIEPAVSVQSGLIQVQADIPNSDGKLRSGMFARANIILPKL 278
            + + D   +  F +G + +I+  +   +G ++++A   N    L    F    + +  L
Sbjct: 255 AVQIWDRGEKLMFGEGLLESIDNQIDATTGTLRLKARFDNEQELLIPNQFVNVRLRVETL 314

Query: 279 ENQVTLPQTAITYTLYGDNVYIVSEENGEKRVQQHVVKVGERSESIAHILEGVKPGDVVV 338
            + V +P  A+ +   G   Y+V E+N   +VQ  ++K G  +     +LEG++ G+ VV
Sbjct: 315 SDAVLIPSAALQFGSRGTFAYVVGEDN---KVQLRLLKAGPSNGETTVVLEGLEVGERVV 371

Query: 339 TTGQVRLSNGAKVRIVES-DATTPPAETPML 368
             G  RL +GA+V +V S       AE P+L
Sbjct: 372 MEGTDRLRDGAEVEVVGSRRMAEEAAENPVL 402